miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2046 5' -54.4 NC_001347.2 + 151250 0.67 0.969047
Target:  5'- aUCGUCAgggggcucgaacgaACGGCGGguggaGGCGCgGGUCaUCUa -3'
miRNA:   3'- -AGCAGU--------------UGUUGCUg----CCGCG-CCAG-AGA- -5'
2046 5' -54.4 NC_001347.2 + 152296 0.67 0.966956
Target:  5'- cUGUUgagaAACAGCGGCGGCGgUGGUgaCUg -3'
miRNA:   3'- aGCAG----UUGUUGCUGCCGC-GCCAgaGA- -5'
2046 5' -54.4 NC_001347.2 + 139112 0.67 0.968162
Target:  5'- gCGUCucugugcGCAcgccugugcuuuguuACGACGGCGgGGUgCUCa -3'
miRNA:   3'- aGCAGu------UGU---------------UGCUGCCGCgCCA-GAGa -5'
2046 5' -54.4 NC_001347.2 + 157803 0.69 0.935733
Target:  5'- gUGUCAcCAACGGCaGcCGCGGUCg-- -3'
miRNA:   3'- aGCAGUuGUUGCUGcC-GCGCCAGaga -5'
2046 5' -54.4 NC_001347.2 + 111267 0.68 0.944852
Target:  5'- aCGUCAu--GCG-CGGCGCcGUCUCc -3'
miRNA:   3'- aGCAGUuguUGCuGCCGCGcCAGAGa -5'
2046 5' -54.4 NC_001347.2 + 92776 0.68 0.948663
Target:  5'- aUCGUCGAacggcaAGCGACGGCccgauacucGCGGUguuccggCUCUu -3'
miRNA:   3'- -AGCAGUUg-----UUGCUGCCG---------CGCCA-------GAGA- -5'
2046 5' -54.4 NC_001347.2 + 89742 0.68 0.953079
Target:  5'- gUCGUCGccuGCGGCGuCGGCGCaGGgaaUUCg -3'
miRNA:   3'- -AGCAGU---UGUUGCuGCCGCG-CCa--GAGa -5'
2046 5' -54.4 NC_001347.2 + 95442 0.68 0.961806
Target:  5'- gUCG-CGACGACGACacuuucguuuuuaugGGCGCGcGUCa-- -3'
miRNA:   3'- -AGCaGUUGUUGCUG---------------CCGCGC-CAGaga -5'
2046 5' -54.4 NC_001347.2 + 63825 0.68 0.960436
Target:  5'- gCGgCGGCGGCGAUGGCGgGG-CUg- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCgCCaGAga -5'
2046 5' -54.4 NC_001347.2 + 7508 0.67 0.962811
Target:  5'- uUCGUcCAACAuCGACGGUGCacccguuacucggaGGUgUCa -3'
miRNA:   3'- -AGCA-GUUGUuGCUGCCGCG--------------CCAgAGa -5'
2046 5' -54.4 NC_001347.2 + 96659 0.67 0.963798
Target:  5'- gCGUCAcgcuggccgaagGC-ACGACGGCGCGuuaCUCg -3'
miRNA:   3'- aGCAGU------------UGuUGCUGCCGCGCca-GAGa -5'
2046 5' -54.4 NC_001347.2 + 93227 0.67 0.963798
Target:  5'- cUCGcugagCGGCAGCGGCGGCacccCGG-CUCa -3'
miRNA:   3'- -AGCa----GUUGUUGCUGCCGc---GCCaGAGa -5'
2046 5' -54.4 NC_001347.2 + 160643 0.67 0.963798
Target:  5'- gCG-CAGCAcgguACcGCGGCcCGGUCUCUg -3'
miRNA:   3'- aGCaGUUGU----UGcUGCCGcGCCAGAGA- -5'
2046 5' -54.4 NC_001347.2 + 21630 0.67 0.966956
Target:  5'- cCGUCGccGCAGgccuuUGuCGGCGCGG-CUCUu -3'
miRNA:   3'- aGCAGU--UGUU-----GCuGCCGCGCCaGAGA- -5'
2046 5' -54.4 NC_001347.2 + 208710 0.66 0.983803
Target:  5'- aCGUCGGCcACcaGCGcCGUGGUCUCg -3'
miRNA:   3'- aGCAGUUGuUGc-UGCcGCGCCAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.