miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20460 5' -55.3 NC_004688.1 + 37404 0.66 0.918204
Target:  5'- aCCGUCGUcgAaagcUUCCGaaccgacgaaGGUGCCCGAc -3'
miRNA:   3'- gGGCGGCAuaU----GAGGCg---------CUAUGGGCU- -5'
20460 5' -55.3 NC_004688.1 + 10866 0.66 0.918204
Target:  5'- -aCGCCGacgaccugGUugUUCGagcCGGUGCCCGAg -3'
miRNA:   3'- ggGCGGCa-------UAugAGGC---GCUAUGGGCU- -5'
20460 5' -55.3 NC_004688.1 + 39278 0.66 0.906238
Target:  5'- cUCCGCCGUAUuuacCUCCGU--UACCg-- -3'
miRNA:   3'- -GGGCGGCAUAu---GAGGCGcuAUGGgcu -5'
20460 5' -55.3 NC_004688.1 + 81204 0.66 0.906238
Target:  5'- aCCGCCGUugcGCUgaaCCGCcGU-CCCGGa -3'
miRNA:   3'- gGGCGGCAua-UGA---GGCGcUAuGGGCU- -5'
20460 5' -55.3 NC_004688.1 + 12356 0.66 0.906238
Target:  5'- aUCGCCacccACUCUGCGGaGCCCGu -3'
miRNA:   3'- gGGCGGcauaUGAGGCGCUaUGGGCu -5'
20460 5' -55.3 NC_004688.1 + 82680 0.66 0.905614
Target:  5'- gCCCGCCGgaUGUGCUaaaaaucCCGC---ACCCGu -3'
miRNA:   3'- -GGGCGGC--AUAUGA-------GGCGcuaUGGGCu -5'
20460 5' -55.3 NC_004688.1 + 88739 0.66 0.899895
Target:  5'- aCCgGCCGgg-GCcgCCGCucUACCCGc -3'
miRNA:   3'- -GGgCGGCauaUGa-GGCGcuAUGGGCu -5'
20460 5' -55.3 NC_004688.1 + 89504 0.66 0.899895
Target:  5'- gCCCGCCGUcgACauUCUGUcg-ACCCa- -3'
miRNA:   3'- -GGGCGGCAuaUG--AGGCGcuaUGGGcu -5'
20460 5' -55.3 NC_004688.1 + 54400 0.66 0.899248
Target:  5'- gCCCgGCCGgu--CUCgGCGAUcuccucgGCCCGu -3'
miRNA:   3'- -GGG-CGGCauauGAGgCGCUA-------UGGGCu -5'
20460 5' -55.3 NC_004688.1 + 24480 0.66 0.893318
Target:  5'- uCCCGuCCGUgccGUACUCCaGCuggggGGUuCCCGGc -3'
miRNA:   3'- -GGGC-GGCA---UAUGAGG-CG-----CUAuGGGCU- -5'
20460 5' -55.3 NC_004688.1 + 44771 0.66 0.893318
Target:  5'- gCCCGCCGcgGUGguggCCGCGAacagUAUCCa- -3'
miRNA:   3'- -GGGCGGCa-UAUga--GGCGCU----AUGGGcu -5'
20460 5' -55.3 NC_004688.1 + 93083 0.67 0.879469
Target:  5'- uCCCGUCGUGgacgaugaacACUCCGuCGAUguaAUCCGu -3'
miRNA:   3'- -GGGCGGCAUa---------UGAGGC-GCUA---UGGGCu -5'
20460 5' -55.3 NC_004688.1 + 38367 0.67 0.849132
Target:  5'- aCCCGCCGUgccgGUAC-CaggaaggGUGGUGCCCa- -3'
miRNA:   3'- -GGGCGGCA----UAUGaGg------CGCUAUGGGcu -5'
20460 5' -55.3 NC_004688.1 + 49079 0.68 0.832739
Target:  5'- gCCGCCaaaggaggGCUCCcggugaGCGAUACCCa- -3'
miRNA:   3'- gGGCGGcaua----UGAGG------CGCUAUGGGcu -5'
20460 5' -55.3 NC_004688.1 + 75579 0.69 0.788656
Target:  5'- gCCGCCGcggACUCCucCGGcugACCCGAg -3'
miRNA:   3'- gGGCGGCauaUGAGGc-GCUa--UGGGCU- -5'
20460 5' -55.3 NC_004688.1 + 53553 0.69 0.787735
Target:  5'- gCCCGCgGUGUcgauguaccagGCUCUccaGCGGgcgccgcUACCCGAg -3'
miRNA:   3'- -GGGCGgCAUA-----------UGAGG---CGCU-------AUGGGCU- -5'
20460 5' -55.3 NC_004688.1 + 54312 0.69 0.77844
Target:  5'- aCUCGCCGUuggugauGUGC-CCGCGGcgGCCgGGg -3'
miRNA:   3'- -GGGCGGCA-------UAUGaGGCGCUa-UGGgCU- -5'
20460 5' -55.3 NC_004688.1 + 68655 0.69 0.76996
Target:  5'- gCCCGCUGcugcCUCUGCGucUAUCCGAu -3'
miRNA:   3'- -GGGCGGCauauGAGGCGCu-AUGGGCU- -5'
20460 5' -55.3 NC_004688.1 + 50224 0.7 0.731146
Target:  5'- cCUCGCUGaGUGCaCCGCcgacuggccGGUGCCCGAg -3'
miRNA:   3'- -GGGCGGCaUAUGaGGCG---------CUAUGGGCU- -5'
20460 5' -55.3 NC_004688.1 + 71675 0.7 0.690937
Target:  5'- -gUGCCGUcGUAUUCCGCGGgcUCCGGa -3'
miRNA:   3'- ggGCGGCA-UAUGAGGCGCUauGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.