miRNA display CGI


Results 21 - 40 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20462 3' -58.3 NC_004688.1 + 61368 0.67 0.729972
Target:  5'- -cUGCCAcCCcuggagaaggucgaaGCCGUGAAUACCGcccGGCa -3'
miRNA:   3'- guGCGGU-GG---------------UGGCGCUUGUGGCa--CCG- -5'
20462 3' -58.3 NC_004688.1 + 108485 0.67 0.726039
Target:  5'- uCGCGuCCAgCGacaGCGAACAccaguCCGUGGUa -3'
miRNA:   3'- -GUGC-GGUgGUgg-CGCUUGU-----GGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 97907 0.67 0.726039
Target:  5'- -cCGCCGCC-CCGCGcGgGCCucucGGCg -3'
miRNA:   3'- guGCGGUGGuGGCGCuUgUGGca--CCG- -5'
20462 3' -58.3 NC_004688.1 + 35742 0.67 0.724067
Target:  5'- aGCGUCACC-CCGCucgguaccguCACCGacUGGCu -3'
miRNA:   3'- gUGCGGUGGuGGCGcuu-------GUGGC--ACCG- -5'
20462 3' -58.3 NC_004688.1 + 41592 0.67 0.720115
Target:  5'- aACGCCaguuucGCCGCUGCGuuggcggggaugucACGCCaGUGGUu -3'
miRNA:   3'- gUGCGG------UGGUGGCGCu-------------UGUGG-CACCG- -5'
20462 3' -58.3 NC_004688.1 + 35918 0.67 0.71615
Target:  5'- cCAUGCCAgCCcacuuauucgGCCGCGA-CGagGUGGCg -3'
miRNA:   3'- -GUGCGGU-GG----------UGGCGCUuGUggCACCG- -5'
20462 3' -58.3 NC_004688.1 + 36812 0.67 0.71615
Target:  5'- aGCGCCcacCCACC-CGAA-GCCGgugGGCu -3'
miRNA:   3'- gUGCGGu--GGUGGcGCUUgUGGCa--CCG- -5'
20462 3' -58.3 NC_004688.1 + 55857 0.67 0.71615
Target:  5'- aCACGCCuuGCCcgauCCGC-AGCAgUCGUGGUc -3'
miRNA:   3'- -GUGCGG--UGGu---GGCGcUUGU-GGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 61439 0.67 0.71615
Target:  5'- gACGCCuCCaaaagACCGgGAAUacgaGCUGUGGUg -3'
miRNA:   3'- gUGCGGuGG-----UGGCgCUUG----UGGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 1510 0.67 0.715157
Target:  5'- cCACGggucgggugagucCCACCAgUaCGGACAcuCCGUGGCg -3'
miRNA:   3'- -GUGC-------------GGUGGUgGcGCUUGU--GGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 877 0.67 0.714163
Target:  5'- cCGCGCUgacgguuGCaCGCCGCGuggagcaGGCGgUGUGGCa -3'
miRNA:   3'- -GUGCGG-------UG-GUGGCGC-------UUGUgGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 18610 0.67 0.70619
Target:  5'- cCGCGCC-CCGCCaGUGAucucguaggugACGCCGUcGUa -3'
miRNA:   3'- -GUGCGGuGGUGG-CGCU-----------UGUGGCAcCG- -5'
20462 3' -58.3 NC_004688.1 + 26328 0.67 0.70619
Target:  5'- aGCGCCcgcaagGCCACCG---ACGCCGaGGCc -3'
miRNA:   3'- gUGCGG------UGGUGGCgcuUGUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 102948 0.67 0.696167
Target:  5'- --aGCCGCCAuCCGCGc-CGCCGaggaucGGCu -3'
miRNA:   3'- gugCGGUGGU-GGCGCuuGUGGCa-----CCG- -5'
20462 3' -58.3 NC_004688.1 + 43865 0.67 0.696167
Target:  5'- -cCGCC-CCgaaGCCGgGAccgGCACCGUccGGCa -3'
miRNA:   3'- guGCGGuGG---UGGCgCU---UGUGGCA--CCG- -5'
20462 3' -58.3 NC_004688.1 + 18085 0.67 0.695162
Target:  5'- cCGCGgCACCACCaGCcgcacuucuuauaGAGCAgCCG-GGCu -3'
miRNA:   3'- -GUGCgGUGGUGG-CG-------------CUUGU-GGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 95922 0.67 0.693149
Target:  5'- gCGCGCCAggcCCACCGCauggaGCCGcaucuagguagaaaUGGCu -3'
miRNA:   3'- -GUGCGGU---GGUGGCGcuug-UGGC--------------ACCG- -5'
20462 3' -58.3 NC_004688.1 + 110380 0.67 0.690127
Target:  5'- -uCGCCugCGCaagGCGAugGCCGcuuaugaagcagugaUGGCc -3'
miRNA:   3'- guGCGGugGUGg--CGCUugUGGC---------------ACCG- -5'
20462 3' -58.3 NC_004688.1 + 13180 0.67 0.686091
Target:  5'- gAUGCCGCCGuCCGCGAGCugGuuGUaGUa -3'
miRNA:   3'- gUGCGGUGGU-GGCGCUUG--UggCAcCG- -5'
20462 3' -58.3 NC_004688.1 + 27893 0.67 0.686091
Target:  5'- gGCGaacCCGUCGCCGUGGuccugACCGUGGCg -3'
miRNA:   3'- gUGC---GGUGGUGGCGCUug---UGGCACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.