miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20463 5' -54.4 NC_004688.1 + 43833 0.66 0.923772
Target:  5'- aCCCCAGUGccGuuGGCGgugauuaucgucCCGGCcgGAACg -3'
miRNA:   3'- -GGGGUCGCuuUggCCGU------------GGCUG--UUUG- -5'
20463 5' -54.4 NC_004688.1 + 107533 0.66 0.923772
Target:  5'- uCCgCuGCGGAA-CGuGCgGCCGACAAGCu -3'
miRNA:   3'- -GGgGuCGCUUUgGC-CG-UGGCUGUUUG- -5'
20463 5' -54.4 NC_004688.1 + 81271 0.66 0.923772
Target:  5'- aCCCGGCGucagguCgGGCACCcGCAc-- -3'
miRNA:   3'- gGGGUCGCuuu---GgCCGUGGcUGUuug -5'
20463 5' -54.4 NC_004688.1 + 55803 0.66 0.923772
Target:  5'- -aCCGGCGGcuAgCGGCGCuCGACAc-- -3'
miRNA:   3'- ggGGUCGCUu-UgGCCGUG-GCUGUuug -5'
20463 5' -54.4 NC_004688.1 + 75368 0.66 0.923772
Target:  5'- aCUCGGacAGGgCGGCGCCGGCGAGa -3'
miRNA:   3'- gGGGUCgcUUUgGCCGUGGCUGUUUg -5'
20463 5' -54.4 NC_004688.1 + 33877 0.66 0.918047
Target:  5'- gCCCUugccGcCGuuACCGGCACCaccaGCGGGCg -3'
miRNA:   3'- -GGGGu---C-GCuuUGGCCGUGGc---UGUUUG- -5'
20463 5' -54.4 NC_004688.1 + 19665 0.66 0.91207
Target:  5'- cCCCCGG-Gcc-CCGGUGCCG-CAGAUg -3'
miRNA:   3'- -GGGGUCgCuuuGGCCGUGGCuGUUUG- -5'
20463 5' -54.4 NC_004688.1 + 24450 0.66 0.91207
Target:  5'- uUCCCGGCGuGAUCGGCcCCaugggGACAu-- -3'
miRNA:   3'- -GGGGUCGCuUUGGCCGuGG-----CUGUuug -5'
20463 5' -54.4 NC_004688.1 + 75599 0.66 0.91207
Target:  5'- aCCCCuGCGAcggggugUCGGCcGCCG-CGGACu -3'
miRNA:   3'- -GGGGuCGCUuu-----GGCCG-UGGCuGUUUG- -5'
20463 5' -54.4 NC_004688.1 + 101845 0.66 0.911459
Target:  5'- aUCCGGCGAugagauuugguucAGCgaaGGCACCGAgGucGACg -3'
miRNA:   3'- gGGGUCGCU-------------UUGg--CCGUGGCUgU--UUG- -5'
20463 5' -54.4 NC_004688.1 + 61004 0.66 0.905845
Target:  5'- cCUCCGGcCGAGGCCc-CGCCGACGGc- -3'
miRNA:   3'- -GGGGUC-GCUUUGGccGUGGCUGUUug -5'
20463 5' -54.4 NC_004688.1 + 20591 0.66 0.905845
Target:  5'- aCgUCAGCGAGGCUGuGCAgCGGCuugucguAGCg -3'
miRNA:   3'- -GgGGUCGCUUUGGC-CGUgGCUGu------UUG- -5'
20463 5' -54.4 NC_004688.1 + 79558 0.66 0.905845
Target:  5'- gCCCCuuuGCGAccaucuuucccAGCUGGCGCuCGGCc--- -3'
miRNA:   3'- -GGGGu--CGCU-----------UUGGCCGUG-GCUGuuug -5'
20463 5' -54.4 NC_004688.1 + 102845 0.66 0.899372
Target:  5'- -aCCAG-GAGACCGGacCGCUGGCGAu- -3'
miRNA:   3'- ggGGUCgCUUUGGCC--GUGGCUGUUug -5'
20463 5' -54.4 NC_004688.1 + 66187 0.66 0.899372
Target:  5'- gCCCgugGGCuuGACCGGCACCuGCugAGGCu -3'
miRNA:   3'- gGGG---UCGcuUUGGCCGUGGcUG--UUUG- -5'
20463 5' -54.4 NC_004688.1 + 100544 0.66 0.899372
Target:  5'- cCCCCcGC---GCCGGCcGCCGAaccCGAGCc -3'
miRNA:   3'- -GGGGuCGcuuUGGCCG-UGGCU---GUUUG- -5'
20463 5' -54.4 NC_004688.1 + 51677 0.66 0.899372
Target:  5'- gUUCAGC---GCCGaCACCGGCGGACg -3'
miRNA:   3'- gGGGUCGcuuUGGCcGUGGCUGUUUG- -5'
20463 5' -54.4 NC_004688.1 + 81472 0.66 0.898712
Target:  5'- aCCCGGCGAAaggaucaaggaucACCccaccgggagGGCACaCGAgcCGAGCg -3'
miRNA:   3'- gGGGUCGCUU-------------UGG----------CCGUG-GCU--GUUUG- -5'
20463 5' -54.4 NC_004688.1 + 31035 0.66 0.897383
Target:  5'- cCCCCGcCGAGGCUGGCGagguugccaggucgUCGGCGuuGGCg -3'
miRNA:   3'- -GGGGUcGCUUUGGCCGU--------------GGCUGU--UUG- -5'
20463 5' -54.4 NC_004688.1 + 48958 0.67 0.892656
Target:  5'- gCUCGGCGucGACgUGGaCACCGuCAAACg -3'
miRNA:   3'- gGGGUCGCu-UUG-GCC-GUGGCuGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.