miRNA: 3'- -CGGgaCAUg---CUGGuCACUGUGGUCAU- -5'
miRNA: 3'- cGGGA------------C-AUGCUGGUCACU--GUGGUCAU- -5'
miRNA: 3'- -CGGGacaUGCUGGUCac-UGUGGUCau -5'
miRNA: 3'- -CGGGa----CAU-GCUGGUCACUGUGG------UCAU- -5'
miRNA: 3'- -CGGGACAUGCUGGUCACUGUGGUCAU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 20465 | 5' | -54.3 | NC_004688.1 | + | 18216 | 0.66 | 0.887133 |
|
Target: 5'- gGCCg-GUGauggGGCCcGUGGCGCCGGUGc -3' miRNA: 3'- -CGGgaCAUg---CUGGuCACUGUGGUCAU- -5' |
|||||||
| 20465 | 5' | -54.3 | NC_004688.1 | + | 74958 | 0.68 | 0.81401 |
|
Target: 5'- uUCCUucuuuuguuggaGuUACGGCCGGUGAuuCGCCAGUAg -3' miRNA: 3'- cGGGA------------C-AUGCUGGUCACU--GUGGUCAU- -5' |
|||||||
| 20465 | 5' | -54.3 | NC_004688.1 | + | 54295 | 0.72 | 0.600276 |
|
Target: 5'- uGCCCgcgGCGGCCGGggaACACCAGg- -3' miRNA: 3'- -CGGGacaUGCUGGUCac-UGUGGUCau -5' |
|||||||
| 20465 | 5' | -54.3 | NC_004688.1 | + | 12511 | 0.74 | 0.496865 |
|
Target: 5'- aGCCCgagagGUGcCGACCGGUGACAUCuccgacGGUGu -3' miRNA: 3'- -CGGGa----CAU-GCUGGUCACUGUGG------UCAU- -5' |
|||||||
| 20465 | 5' | -54.3 | NC_004688.1 | + | 36636 | 1.08 | 0.003002 |
|
Target: 5'- uGCCCUGUACGACCAGUGACACCAGUAc -3' miRNA: 3'- -CGGGACAUGCUGGUCACUGUGGUCAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home