miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20466 3' -62.7 NC_004688.1 + 80532 0.66 0.547209
Target:  5'- cCGGCGUCCucgaUgGCCaCGGucAGCCGGUGc -3'
miRNA:   3'- -GUCGCGGGug--GgUGG-GCU--UCGGCCAC- -5'
20466 3' -62.7 NC_004688.1 + 59322 0.66 0.547209
Target:  5'- gAGgGCuCCACCCuGCCCGAcgcgauGGCCGc-- -3'
miRNA:   3'- gUCgCG-GGUGGG-UGGGCU------UCGGCcac -5'
20466 3' -62.7 NC_004688.1 + 79859 0.66 0.537465
Target:  5'- gAGCGacaCCCACgggCGCCCGucGGCCGaGUGg -3'
miRNA:   3'- gUCGC---GGGUGg--GUGGGCu-UCGGC-CAC- -5'
20466 3' -62.7 NC_004688.1 + 12271 0.66 0.537465
Target:  5'- gGGCGUUguCgUACCCGAuGCCGGg- -3'
miRNA:   3'- gUCGCGGguGgGUGGGCUuCGGCCac -5'
20466 3' -62.7 NC_004688.1 + 83120 0.66 0.523926
Target:  5'- -cGCGCaCCGCCUugcgauggacuuuCCCGAAGuuGGg- -3'
miRNA:   3'- guCGCG-GGUGGGu------------GGGCUUCggCCac -5'
20466 3' -62.7 NC_004688.1 + 57560 0.66 0.522003
Target:  5'- gGGCGCCCgucggcaguaaacccAUCCACCUGA-GCgGGa- -3'
miRNA:   3'- gUCGCGGG---------------UGGGUGGGCUuCGgCCac -5'
20466 3' -62.7 NC_004688.1 + 14748 0.66 0.516248
Target:  5'- cCGGuCGCCauaucccccgcgaCACCCAagaaggcUCCGcGGCCGGUGa -3'
miRNA:   3'- -GUC-GCGG-------------GUGGGU-------GGGCuUCGGCCAC- -5'
20466 3' -62.7 NC_004688.1 + 61156 0.66 0.508616
Target:  5'- -cGCGCCgGCCCACCaccacguGCUGGa- -3'
miRNA:   3'- guCGCGGgUGGGUGGgcuu---CGGCCac -5'
20466 3' -62.7 NC_004688.1 + 33486 0.66 0.499144
Target:  5'- cCAGCGCCCACCgCAaCCG-GGUCGaUGu -3'
miRNA:   3'- -GUCGCGGGUGG-GUgGGCuUCGGCcAC- -5'
20466 3' -62.7 NC_004688.1 + 95921 0.66 0.48975
Target:  5'- -cGCGCCagGCCCACCgcaUGGAGCCGc-- -3'
miRNA:   3'- guCGCGGg-UGGGUGG---GCUUCGGCcac -5'
20466 3' -62.7 NC_004688.1 + 62434 0.67 0.48044
Target:  5'- aAGUuuuGCCCGCCgGCUCuuGGCCGGg- -3'
miRNA:   3'- gUCG---CGGGUGGgUGGGcuUCGGCCac -5'
20466 3' -62.7 NC_004688.1 + 23176 0.67 0.48044
Target:  5'- cCAGCG-CCGCCUGCUgGGcGGCCGGa- -3'
miRNA:   3'- -GUCGCgGGUGGGUGGgCU-UCGGCCac -5'
20466 3' -62.7 NC_004688.1 + 14290 0.67 0.471218
Target:  5'- -uGCGCCCcaAUCC-CCCGccGGCuCGGUGg -3'
miRNA:   3'- guCGCGGG--UGGGuGGGCu-UCG-GCCAC- -5'
20466 3' -62.7 NC_004688.1 + 6967 0.67 0.471218
Target:  5'- gCAGCGCCCagcgGCCCaaugugacGCCCauGAGCUGGg- -3'
miRNA:   3'- -GUCGCGGG----UGGG--------UGGGc-UUCGGCCac -5'
20466 3' -62.7 NC_004688.1 + 10874 0.67 0.4703
Target:  5'- uGGCGCgCACgCCgacgACCUGGuuguucgAGCCGGUGc -3'
miRNA:   3'- gUCGCGgGUG-GG----UGGGCU-------UCGGCCAC- -5'
20466 3' -62.7 NC_004688.1 + 31814 0.67 0.444106
Target:  5'- --cCG-CCACCCACCa--GGCCGGUGa -3'
miRNA:   3'- gucGCgGGUGGGUGGgcuUCGGCCAC- -5'
20466 3' -62.7 NC_004688.1 + 27777 0.68 0.427396
Target:  5'- gUAGgGCCCGCCCGacucCCCGucgacaucgacgucGUCGGUGg -3'
miRNA:   3'- -GUCgCGGGUGGGU----GGGCuu------------CGGCCAC- -5'
20466 3' -62.7 NC_004688.1 + 23980 0.68 0.417036
Target:  5'- cCAGCGCCCcggagauGCCCGcCCCGGccuucugcgccaGGCuCGGg- -3'
miRNA:   3'- -GUCGCGGG-------UGGGU-GGGCU------------UCG-GCCac -5'
20466 3' -62.7 NC_004688.1 + 4713 0.68 0.409367
Target:  5'- aGGcCGCCCACUucuuCACCCaGgcGCCGGa- -3'
miRNA:   3'- gUC-GCGGGUGG----GUGGG-CuuCGGCCac -5'
20466 3' -62.7 NC_004688.1 + 99373 0.68 0.409367
Target:  5'- aCAGCGUCC-CUCA-CCGAuAGCCGGg- -3'
miRNA:   3'- -GUCGCGGGuGGGUgGGCU-UCGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.