miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20466 5' -57.3 NC_004688.1 + 17764 0.66 0.761378
Target:  5'- cUCACCUuucgGGGgCCGCCcGCGGCg -3'
miRNA:   3'- cAGUGGAcgaaCCUgGGCGGuCGUUG- -5'
20466 5' -57.3 NC_004688.1 + 73513 0.67 0.676994
Target:  5'- -aCGCCUGCgagccUUGGugCaCGCCgcgcccugcggcggGGCAGCa -3'
miRNA:   3'- caGUGGACG-----AACCugG-GCGG--------------UCGUUG- -5'
20466 5' -57.3 NC_004688.1 + 2676 0.68 0.617139
Target:  5'- --gGCCUGagUGGAauccagucaCCGCCGGCGGCa -3'
miRNA:   3'- cagUGGACgaACCUg--------GGCGGUCGUUG- -5'
20466 5' -57.3 NC_004688.1 + 16958 0.69 0.596147
Target:  5'- cGUCgGCCUGUUcGGGgCCGCUGGCGGg -3'
miRNA:   3'- -CAG-UGGACGAaCCUgGGCGGUCGUUg -5'
20466 5' -57.3 NC_004688.1 + 80466 0.69 0.564887
Target:  5'- -cCACCggGCUUgaGGACCCGCaGGCAuuGCu -3'
miRNA:   3'- caGUGGa-CGAA--CCUGGGCGgUCGU--UG- -5'
20466 5' -57.3 NC_004688.1 + 60614 0.7 0.534072
Target:  5'- uGUCGCUauCgacGGGCCUGUCAGCAACg -3'
miRNA:   3'- -CAGUGGacGaa-CCUGGGCGGUCGUUG- -5'
20466 5' -57.3 NC_004688.1 + 17044 0.7 0.503875
Target:  5'- cUCGCCgccGUUUGGGCCCGaCCAGgGcuuGCg -3'
miRNA:   3'- cAGUGGa--CGAACCUGGGC-GGUCgU---UG- -5'
20466 5' -57.3 NC_004688.1 + 68902 0.71 0.474441
Target:  5'- -aCGCCaagGCgUGGGCCCuacuGCCGGUAACg -3'
miRNA:   3'- caGUGGa--CGaACCUGGG----CGGUCGUUG- -5'
20466 5' -57.3 NC_004688.1 + 82909 0.71 0.474441
Target:  5'- -cCACCgagguagGCggGGACCgGCCAGUGGCc -3'
miRNA:   3'- caGUGGa------CGaaCCUGGgCGGUCGUUG- -5'
20466 5' -57.3 NC_004688.1 + 17716 0.71 0.464821
Target:  5'- --gGCCUGCUcgaGcGGCUCGUCGGCAACg -3'
miRNA:   3'- cagUGGACGAa--C-CUGGGCGGUCGUUG- -5'
20466 5' -57.3 NC_004688.1 + 36776 1.1 0.001031
Target:  5'- cGUCACCUGCUUGGACCCGCCAGCAACg -3'
miRNA:   3'- -CAGUGGACGAACCUGGGCGGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.