miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
20467	3'	-52.3	NC_004688.1	+	39822	0.66	0.973155
	Target:  5'- uGUCCGGUgccgugguugUCgCAGUGUUugggugcGGCGucuGCGa -3' miRNA:   3'- gCAGGCCA----------AGgGUUACAA-------CCGCu--UGC- -5'
20467	3'	-52.3	NC_004688.1	+	16983	0.66	0.964125
	Target:  5'- aGUCCGG--CCgCGGUGcgGGCGAugACGu -3' miRNA:   3'- gCAGGCCaaGG-GUUACaaCCGCU--UGC- -5'
20467	3'	-52.3	NC_004688.1	+	1505	0.67	0.956778
	Target:  5'- gGUCgGGUgagUCCCAccaGUacggacacuccgUGGCGGGCGg -3' miRNA:   3'- gCAGgCCA---AGGGUua-CA------------ACCGCUUGC- -5'
20467	3'	-52.3	NC_004688.1	+	23486	0.67	0.941103
	Target:  5'- gCG-CCGGUUUCCGA-GaucuucagcagcgcaUUGGUGAACGg -3' miRNA:   3'- -GCaGGCCAAGGGUUaC---------------AACCGCUUGC- -5'
20467	3'	-52.3	NC_004688.1	+	24775	0.69	0.86987
	Target:  5'- aGUCCGGcgCCaagcuUGUUGGCGu-CGg -3' miRNA:   3'- gCAGGCCaaGGguu--ACAACCGCuuGC- -5'
20467	3'	-52.3	NC_004688.1	+	43842	0.73	0.71339
	Target:  5'- cCGUCCGGcacCCCAGUgccGUUGGCGGu-- -3' miRNA:   3'- -GCAGGCCaa-GGGUUA---CAACCGCUugc -5'
20467	3'	-52.3	NC_004688.1	+	82752	0.73	0.69262
	Target:  5'- aGUCCGGUugguagucgucgUCCCAAUGgaUGGUGGAg- -3' miRNA:   3'- gCAGGCCA------------AGGGUUACa-ACCGCUUgc -5'
20467	3'	-52.3	NC_004688.1	+	23822	0.75	0.587042
	Target:  5'- aGUCCGGggugaUCCUucaugagGUUGGUGAGCGg -3' miRNA:   3'- gCAGGCCa----AGGGuua----CAACCGCUUGC- -5'
20467	3'	-52.3	NC_004688.1	+	63184	0.77	0.484723
	Target:  5'- gGUCCGGggcggaUUCCCAAUGcggGGCGuAGCGg -3' miRNA:   3'- gCAGGCC------AAGGGUUACaa-CCGC-UUGC- -5'
20467	3'	-52.3	NC_004688.1	+	36957	1.11	0.004157
	Target:  5'- aCGUCCGGUUCCCAAUGUUGGCGAACGa -3' miRNA:   3'- -GCAGGCCAAGGGUUACAACCGCUUGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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