miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20467 5' -63.4 NC_004688.1 + 26370 0.66 0.541112
Target:  5'- aCCGGCCAUCGcCgagcccgcgcCCAuGGCGCccuGGAUg -3'
miRNA:   3'- gGGCCGGUGGCaGa---------GGU-CCGCG---CCUG- -5'
20467 5' -63.4 NC_004688.1 + 33655 0.66 0.541112
Target:  5'- gCCGGCCgcGCCGUCaCCAGGacCGCccACg -3'
miRNA:   3'- gGGCCGG--UGGCAGaGGUCC--GCGccUG- -5'
20467 5' -63.4 NC_004688.1 + 11384 0.66 0.531554
Target:  5'- gCgGuGCCACCGaUCUCCAcgaccgacugcGGgaaGCGGGCg -3'
miRNA:   3'- gGgC-CGGUGGC-AGAGGU-----------CCg--CGCCUG- -5'
20467 5' -63.4 NC_004688.1 + 6144 0.66 0.522058
Target:  5'- gUCGGCCGCCGUC-CCGGuGUaaacgaucuGUGGGu -3'
miRNA:   3'- gGGCCGGUGGCAGaGGUC-CG---------CGCCUg -5'
20467 5' -63.4 NC_004688.1 + 33877 0.66 0.521112
Target:  5'- gCCCuuGCCGCCGUUaCC-GGCaccaccaGCGGGCg -3'
miRNA:   3'- -GGGc-CGGUGGCAGaGGuCCG-------CGCCUG- -5'
20467 5' -63.4 NC_004688.1 + 91421 0.66 0.519221
Target:  5'- gCCCaGGCCgagcucauuacucaGCCc-CUCCAGGCGCuuGGAg -3'
miRNA:   3'- -GGG-CCGG--------------UGGcaGAGGUCCGCG--CCUg -5'
20467 5' -63.4 NC_004688.1 + 87184 0.66 0.512628
Target:  5'- aUCGGUCACaauucCUCCGGGUcugugGCGGGCu -3'
miRNA:   3'- gGGCCGGUGgca--GAGGUCCG-----CGCCUG- -5'
20467 5' -63.4 NC_004688.1 + 67210 0.66 0.512628
Target:  5'- gUCCGaCCACCGUC-CUGGGCuaucUGGACu -3'
miRNA:   3'- -GGGCcGGUGGCAGaGGUCCGc---GCCUG- -5'
20467 5' -63.4 NC_004688.1 + 10356 0.66 0.509813
Target:  5'- gCCGGCUcgucggccaugccaACgGUCUgcaucgCCAGGuCGCGGAa -3'
miRNA:   3'- gGGCCGG--------------UGgCAGA------GGUCC-GCGCCUg -5'
20467 5' -63.4 NC_004688.1 + 58957 0.66 0.503269
Target:  5'- cCUCGGCUGgaGcCUCCGGGUGCgauGGAUg -3'
miRNA:   3'- -GGGCCGGUggCaGAGGUCCGCG---CCUG- -5'
20467 5' -63.4 NC_004688.1 + 8374 0.67 0.484781
Target:  5'- aUUGGUgGCgCGUCUucCCAcGCGCGGACu -3'
miRNA:   3'- gGGCCGgUG-GCAGA--GGUcCGCGCCUG- -5'
20467 5' -63.4 NC_004688.1 + 80576 0.67 0.475658
Target:  5'- aCCC-GCUGCCGUacagCCAGGCgaucgagucGCGGAUc -3'
miRNA:   3'- -GGGcCGGUGGCAga--GGUCCG---------CGCCUG- -5'
20467 5' -63.4 NC_004688.1 + 44223 0.67 0.466623
Target:  5'- gCCGGUgacgugGCCGUUcagcuugCCcGGCGCGGACu -3'
miRNA:   3'- gGGCCGg-----UGGCAGa------GGuCCGCGCCUG- -5'
20467 5' -63.4 NC_004688.1 + 16982 0.67 0.466623
Target:  5'- gUCCGGCCGCgGUg--CGGGCGauGACg -3'
miRNA:   3'- -GGGCCGGUGgCAgagGUCCGCgcCUG- -5'
20467 5' -63.4 NC_004688.1 + 94000 0.67 0.457677
Target:  5'- cCCCcGCCACC-UCUaCGcGGCaGCGGACa -3'
miRNA:   3'- -GGGcCGGUGGcAGAgGU-CCG-CGCCUG- -5'
20467 5' -63.4 NC_004688.1 + 23959 0.67 0.457677
Target:  5'- cCCCGGCCuuCUG-CgCCAGGCuCGGGa -3'
miRNA:   3'- -GGGCCGGu-GGCaGaGGUCCGcGCCUg -5'
20467 5' -63.4 NC_004688.1 + 985 0.67 0.456787
Target:  5'- aCCCGGCCGUCGacaaUCUCgAuggucacGGCGaCGGGCu -3'
miRNA:   3'- -GGGCCGGUGGC----AGAGgU-------CCGC-GCCUG- -5'
20467 5' -63.4 NC_004688.1 + 19096 0.67 0.455011
Target:  5'- uCCgGGCCACgCG-CUgCAugauuucgaaggccGGCGUGGGCg -3'
miRNA:   3'- -GGgCCGGUG-GCaGAgGU--------------CCGCGCCUG- -5'
20467 5' -63.4 NC_004688.1 + 57232 0.67 0.431405
Target:  5'- gCCGaauucaucGCCACCGUCgucgcaucacCCGGGCG-GGGCc -3'
miRNA:   3'- gGGC--------CGGUGGCAGa---------GGUCCGCgCCUG- -5'
20467 5' -63.4 NC_004688.1 + 46184 0.68 0.414389
Target:  5'- aCCGGCCAgcuguccgcCCGggugCUCCAGGUggucgaaugaaGCGcGGCu -3'
miRNA:   3'- gGGCCGGU---------GGCa---GAGGUCCG-----------CGC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.