miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2047 3' -45.3 NC_001347.2 + 36362 0.66 1
Target:  5'- --uGCGUGUUCAgUUGGGcGGCAGggGCa -3'
miRNA:   3'- cuuUGCAUAGGU-AACCUcUUGUCa-CG- -5'
2047 3' -45.3 NC_001347.2 + 190298 0.66 1
Target:  5'- -uGACGUGUCgGgaaaGGAGGACGGa-- -3'
miRNA:   3'- cuUUGCAUAGgUaa--CCUCUUGUCacg -5'
2047 3' -45.3 NC_001347.2 + 170002 0.67 0.999999
Target:  5'- gGAAGCG--UCCGcUGGAaauaccaacguaucGAGCGGUGUa -3'
miRNA:   3'- -CUUUGCauAGGUaACCU--------------CUUGUCACG- -5'
2047 3' -45.3 NC_001347.2 + 7445 0.67 0.999999
Target:  5'- -cGAUGUcUCCcUUGGAGAACGucGCa -3'
miRNA:   3'- cuUUGCAuAGGuAACCUCUUGUcaCG- -5'
2047 3' -45.3 NC_001347.2 + 151200 0.67 0.999999
Target:  5'- cGGGAgGgggAUUCGgaGGAGAGCAGcGCg -3'
miRNA:   3'- -CUUUgCa--UAGGUaaCCUCUUGUCaCG- -5'
2047 3' -45.3 NC_001347.2 + 32142 0.66 0.999999
Target:  5'- ---uCGUAUUCGUcauuugugUGGGGAACgGGUGUa -3'
miRNA:   3'- cuuuGCAUAGGUA--------ACCUCUUG-UCACG- -5'
2047 3' -45.3 NC_001347.2 + 56393 0.66 0.999999
Target:  5'- cGuuGCGgugCUGUuaacggUGGAGGGCAGUGUa -3'
miRNA:   3'- -CuuUGCauaGGUA------ACCUCUUGUCACG- -5'
2047 3' -45.3 NC_001347.2 + 183943 0.66 0.999999
Target:  5'- uGAGCcaGUcGUCCAcggGGAGAACGG-GCa -3'
miRNA:   3'- cUUUG--CA-UAGGUaa-CCUCUUGUCaCG- -5'
2047 3' -45.3 NC_001347.2 + 187023 0.66 0.999999
Target:  5'- uGAugGUGUCCAUcgUGGGcGAAUAGcagaccGCg -3'
miRNA:   3'- cUUugCAUAGGUA--ACCU-CUUGUCa-----CG- -5'
2047 3' -45.3 NC_001347.2 + 186130 0.66 0.999999
Target:  5'- aGAGACGUAgggaguuuguagcgCCAcgaaGGAGAugAGUaGCa -3'
miRNA:   3'- -CUUUGCAUa-------------GGUaa--CCUCUugUCA-CG- -5'
2047 3' -45.3 NC_001347.2 + 108238 0.66 0.999999
Target:  5'- cGAAAUGaUAUCCGUacUGGgucccauuucGGGGCAcGUGCu -3'
miRNA:   3'- -CUUUGC-AUAGGUA--ACC----------UCUUGU-CACG- -5'
2047 3' -45.3 NC_001347.2 + 67629 0.67 0.999998
Target:  5'- cAGACGUGUCCAgcGGcAGcGACA-UGCg -3'
miRNA:   3'- cUUUGCAUAGGUaaCC-UC-UUGUcACG- -5'
2047 3' -45.3 NC_001347.2 + 175657 0.68 0.99998
Target:  5'- -cGugGUGUUCAccgUGGugauuaaccGGGACAGUGCc -3'
miRNA:   3'- cuUugCAUAGGUa--ACC---------UCUUGUCACG- -5'
2047 3' -45.3 NC_001347.2 + 147891 0.69 0.999912
Target:  5'- -uGGCGUAgCCAUUGGGGccGugGGUGg -3'
miRNA:   3'- cuUUGCAUaGGUAACCUC--UugUCACg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.