miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20470 3' -47.2 NC_004688.1 + 20317 0.66 0.999057
Target:  5'- -cGUCGUUGCCGAgGCcgACCGcGGGg -3'
miRNA:   3'- cuUAGUAAUGGUUgUGugUGGCaCCU- -5'
20470 3' -47.2 NC_004688.1 + 76614 0.66 0.999057
Target:  5'- aGGAUCucgcUACCGACGaaUACGCCGacGGAg -3'
miRNA:   3'- -CUUAGua--AUGGUUGU--GUGUGGCa-CCU- -5'
20470 3' -47.2 NC_004688.1 + 100160 0.66 0.998839
Target:  5'- aGGUC---ACCGGC-CGCACCGaUGGAc -3'
miRNA:   3'- cUUAGuaaUGGUUGuGUGUGGC-ACCU- -5'
20470 3' -47.2 NC_004688.1 + 29162 0.66 0.99858
Target:  5'- --uUCGaUugUGACGgGCACCGUGGu -3'
miRNA:   3'- cuuAGUaAugGUUGUgUGUGGCACCu -5'
20470 3' -47.2 NC_004688.1 + 50853 0.66 0.99858
Target:  5'- cGGcgCcgUACCGGgAguCACUGUGGAc -3'
miRNA:   3'- -CUuaGuaAUGGUUgUguGUGGCACCU- -5'
20470 3' -47.2 NC_004688.1 + 31404 0.67 0.997489
Target:  5'- ---gCAUUGCCcGCGgACACCGuUGGc -3'
miRNA:   3'- cuuaGUAAUGGuUGUgUGUGGC-ACCu -5'
20470 3' -47.2 NC_004688.1 + 76220 0.67 0.997489
Target:  5'- uAGUCGaUACCGggGCGCACGCCGg--- -3'
miRNA:   3'- cUUAGUaAUGGU--UGUGUGUGGCaccu -5'
20470 3' -47.2 NC_004688.1 + 101937 0.68 0.995774
Target:  5'- -cAUCggUGCCGugAUACGCCGgcgcaacggGGAg -3'
miRNA:   3'- cuUAGuaAUGGUugUGUGUGGCa--------CCU- -5'
20470 3' -47.2 NC_004688.1 + 21701 0.69 0.992112
Target:  5'- gGGAUCGUUcUCAACGCGCuCC-UGGAa -3'
miRNA:   3'- -CUUAGUAAuGGUUGUGUGuGGcACCU- -5'
20470 3' -47.2 NC_004688.1 + 32569 0.7 0.984414
Target:  5'- cGGAUC---GCCGACAC-CACCGUGu- -3'
miRNA:   3'- -CUUAGuaaUGGUUGUGuGUGGCACcu -5'
20470 3' -47.2 NC_004688.1 + 5812 0.71 0.972018
Target:  5'- gGAGUCGUUgucgACCGugAUGCACCGcgucgGGAc -3'
miRNA:   3'- -CUUAGUAA----UGGUugUGUGUGGCa----CCU- -5'
20470 3' -47.2 NC_004688.1 + 83130 0.74 0.903627
Target:  5'- --uUC-UUGCCGGCGCGCACCGccuugcgaUGGAc -3'
miRNA:   3'- cuuAGuAAUGGUUGUGUGUGGC--------ACCU- -5'
20470 3' -47.2 NC_004688.1 + 33867 0.75 0.840509
Target:  5'- ---cCGUUACCGGCACcaccagcgggcGCGCCGUGGc -3'
miRNA:   3'- cuuaGUAAUGGUUGUG-----------UGUGGCACCu -5'
20470 3' -47.2 NC_004688.1 + 38139 1.11 0.011217
Target:  5'- cGAAUCAUUACCAACACACACCGUGGAa -3'
miRNA:   3'- -CUUAGUAAUGGUUGUGUGUGGCACCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.