miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20470 5' -55 NC_004688.1 + 6591 0.66 0.87372
Target:  5'- -cUCCACGuGGAUGCGGCcgucGGUGCa- -3'
miRNA:   3'- auGGGUGCcCCUACGCUGa---UUACGag -5'
20470 5' -55 NC_004688.1 + 42050 0.67 0.824276
Target:  5'- aGCaUgGCGGGGAU-CGACUugucccccaGGUGCUCg -3'
miRNA:   3'- aUG-GgUGCCCCUAcGCUGA---------UUACGAG- -5'
20470 5' -55 NC_004688.1 + 17748 0.67 0.815324
Target:  5'- cGCCCGCGGcggcgcuuaGGA-GCGGCUucgacggccUGCUCg -3'
miRNA:   3'- aUGGGUGCC---------CCUaCGCUGAuu-------ACGAG- -5'
20470 5' -55 NC_004688.1 + 89358 0.67 0.815324
Target:  5'- -uCCCAgcCGGGGAgcaugGCGAUgugAGUGCa- -3'
miRNA:   3'- auGGGU--GCCCCUa----CGCUGa--UUACGag -5'
20470 5' -55 NC_004688.1 + 97901 0.67 0.80619
Target:  5'- -cCCCGCGcGGGccucucgGCGGCUAGgcGCUCc -3'
miRNA:   3'- auGGGUGC-CCCua-----CGCUGAUUa-CGAG- -5'
20470 5' -55 NC_004688.1 + 88720 0.68 0.7778
Target:  5'- cUACCCGCaGGGAgcaGCGACcug-GCUUu -3'
miRNA:   3'- -AUGGGUGcCCCUa--CGCUGauuaCGAG- -5'
20470 5' -55 NC_004688.1 + 49647 0.68 0.758149
Target:  5'- aUugCgACGGGGAgcUGCGACgcg-GCUa -3'
miRNA:   3'- -AugGgUGCCCCU--ACGCUGauuaCGAg -5'
20470 5' -55 NC_004688.1 + 73773 0.69 0.707085
Target:  5'- uUGCCCuuCGGGGAUcuCGAaguaGAUGCUCa -3'
miRNA:   3'- -AUGGGu-GCCCCUAc-GCUga--UUACGAG- -5'
20470 5' -55 NC_004688.1 + 87913 0.69 0.707085
Target:  5'- gGCCCGCuccaGGGAUGCGACgcg-GUUUu -3'
miRNA:   3'- aUGGGUGc---CCCUACGCUGauuaCGAG- -5'
20470 5' -55 NC_004688.1 + 100578 0.69 0.696624
Target:  5'- cGCCCugGGGGGcuucuuUGCGGCgauacUGCg- -3'
miRNA:   3'- aUGGGugCCCCU------ACGCUGauu--ACGag -5'
20470 5' -55 NC_004688.1 + 76156 0.7 0.643639
Target:  5'- aGCCCcuCGGGGuUGCGACUuuuccAUGCa- -3'
miRNA:   3'- aUGGGu-GCCCCuACGCUGAu----UACGag -5'
20470 5' -55 NC_004688.1 + 48596 0.7 0.643639
Target:  5'- gUACUCgaACGGGGAUGCcGACga--GCUCu -3'
miRNA:   3'- -AUGGG--UGCCCCUACG-CUGauuaCGAG- -5'
20470 5' -55 NC_004688.1 + 8557 0.72 0.558778
Target:  5'- -gUCCAUGGGGAU-CGACcGGUGUUCg -3'
miRNA:   3'- auGGGUGCCCCUAcGCUGaUUACGAG- -5'
20470 5' -55 NC_004688.1 + 47520 0.76 0.342949
Target:  5'- cACCUACGGaGGAacaaUGACUGAUGCUCg -3'
miRNA:   3'- aUGGGUGCC-CCUac--GCUGAUUACGAG- -5'
20470 5' -55 NC_004688.1 + 95333 0.81 0.170135
Target:  5'- gGCCCucaacGCGGGGAUGCGACggc-GCUCu -3'
miRNA:   3'- aUGGG-----UGCCCCUACGCUGauuaCGAG- -5'
20470 5' -55 NC_004688.1 + 38105 1.08 0.002271
Target:  5'- cUACCCACGGGGAUGCGACUAAUGCUCa -3'
miRNA:   3'- -AUGGGUGCCCCUACGCUGAUUACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.