Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20475 | 5' | -49.7 | NC_004688.1 | + | 54287 | 0.69 | 0.966486 |
Target: 5'- gCgGCCGgggaacaccaGGGCGUccGGAUUGgCCGGCa -3' miRNA: 3'- -GgCGGCa---------UUUGCAuuCCUAAC-GGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 110749 | 0.69 | 0.95536 |
Target: 5'- cCUGCgGUuuuGCGUuugcAAGGAUUaGCUGACg -3' miRNA: 3'- -GGCGgCAuu-UGCA----UUCCUAA-CGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 19882 | 0.7 | 0.946687 |
Target: 5'- uCCGCCGUucACGUAGGcGcccGCCGuCa -3' miRNA: 3'- -GGCGGCAuuUGCAUUC-CuaaCGGCuG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 24218 | 0.7 | 0.941961 |
Target: 5'- uCCGUCGcgccCGUGGGGAccgUUGCCGGu -3' miRNA: 3'- -GGCGGCauuuGCAUUCCU---AACGGCUg -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 41126 | 0.7 | 0.941961 |
Target: 5'- gCCGCCG--AAUGUcGGGAacagGCCGAUc -3' miRNA: 3'- -GGCGGCauUUGCAuUCCUaa--CGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 75354 | 0.7 | 0.941961 |
Target: 5'- gCGCCG---GCGagAAGGAUguUGCCGAUc -3' miRNA: 3'- gGCGGCauuUGCa-UUCCUA--ACGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 35694 | 0.7 | 0.936972 |
Target: 5'- uUGCCGUgcgcGAACGUGGGGGUUcCCacgGACa -3' miRNA: 3'- gGCGGCA----UUUGCAUUCCUAAcGG---CUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 24857 | 0.7 | 0.931717 |
Target: 5'- -aGCCGU-GGCG--AGG-UUGCCGACg -3' miRNA: 3'- ggCGGCAuUUGCauUCCuAACGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 68005 | 0.71 | 0.914352 |
Target: 5'- cCCGCUG-AAGCGUGAGcGAgaaGCCGcCa -3' miRNA: 3'- -GGCGGCaUUUGCAUUC-CUaa-CGGCuG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 102832 | 0.72 | 0.887507 |
Target: 5'- aCCGCUGgcGAuCGUGAGcGcuAUUGCCGAa -3' miRNA: 3'- -GGCGGCauUU-GCAUUC-C--UAACGGCUg -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 3424 | 0.72 | 0.872559 |
Target: 5'- gCGCC-UGAAgGUGAGGGUuagGUCGGCa -3' miRNA: 3'- gGCGGcAUUUgCAUUCCUAa--CGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 108625 | 0.73 | 0.822176 |
Target: 5'- aCCGCCGUAggugggAACGaUGAGcGAgcaauucgGCCGACu -3' miRNA: 3'- -GGCGGCAU------UUGC-AUUC-CUaa------CGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 41989 | 0.74 | 0.803746 |
Target: 5'- gUCGCCGguccGGACGUAGuGGUaGCCGGCg -3' miRNA: 3'- -GGCGGCa---UUUGCAUUcCUAaCGGCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 105744 | 0.75 | 0.744625 |
Target: 5'- aUCGCCGUAAAUGUGuGGAUggGUcaCGACg -3' miRNA: 3'- -GGCGGCAUUUGCAUuCCUAa-CG--GCUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 66995 | 0.75 | 0.734324 |
Target: 5'- cUCGUauuCGUAAACGUAgucGGGAUUGCCcGCg -3' miRNA: 3'- -GGCG---GCAUUUGCAU---UCCUAACGGcUG- -5' |
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20475 | 5' | -49.7 | NC_004688.1 | + | 41371 | 1.12 | 0.006457 |
Target: 5'- gCCGCCGUAAACGUAAGGAUUGCCGACc -3' miRNA: 3'- -GGCGGCAUUUGCAUUCCUAACGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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