Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20477 | 3' | -61.4 | NC_004688.1 | + | 43861 | 1.1 | 0.000733 |
Target: 5'- cCCGAAGCCGGGACCGGCACCGUCCGGc -3' miRNA: 3'- -GGCUUCGGCCCUGGCCGUGGCAGGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 44255 | 0.78 | 0.135232 |
Target: 5'- uCCGGccgcaagcAGUCGGGGCCGGCgauGCCG-CCGGu -3' miRNA: 3'- -GGCU--------UCGGCCCUGGCCG---UGGCaGGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 50865 | 0.76 | 0.181434 |
Target: 5'- aCGcAGGCC--GACCGGCGCCGUaCCGGg -3' miRNA: 3'- gGC-UUCGGccCUGGCCGUGGCA-GGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 82907 | 0.75 | 0.211427 |
Target: 5'- aCCGAgguaGGCgGGGACCGGCcaguggccuauugucACCGUCUccuGGg -3' miRNA: 3'- -GGCU----UCGgCCCUGGCCG---------------UGGCAGG---CC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 20022 | 0.74 | 0.24108 |
Target: 5'- aCGAAGCCggcgGGGAUgaugggGGCGCCGUCgGGg -3' miRNA: 3'- gGCUUCGG----CCCUGg-----CCGUGGCAGgCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 26393 | 0.74 | 0.252483 |
Target: 5'- gCCGAGGCCGccggagcugccGGACCGGCcAUCG-CCGa -3' miRNA: 3'- -GGCUUCGGC-----------CCUGGCCG-UGGCaGGCc -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 28425 | 0.73 | 0.302555 |
Target: 5'- aCGu-GCCGGGGCCGuacacCACCagGUCCGGg -3' miRNA: 3'- gGCuuCGGCCCUGGCc----GUGG--CAGGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 2066 | 0.72 | 0.316211 |
Target: 5'- cCCGAAGCCGGcGAUCuuccCACUGgUCCGGa -3' miRNA: 3'- -GGCUUCGGCC-CUGGcc--GUGGC-AGGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 89799 | 0.7 | 0.424487 |
Target: 5'- gCGAuGUCGGGGCC-GCGCCaG-CCGGg -3' miRNA: 3'- gGCUuCGGCCCUGGcCGUGG-CaGGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 85893 | 0.7 | 0.441676 |
Target: 5'- aCCGGAGCguUGGGACCGaGC-CCc-CCGGu -3' miRNA: 3'- -GGCUUCG--GCCCUGGC-CGuGGcaGGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 18454 | 0.69 | 0.459251 |
Target: 5'- gCgGAAGCggcaacCGGGaACCGGCACCucgGUgCGGa -3' miRNA: 3'- -GgCUUCG------GCCC-UGGCCGUGG---CAgGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 40250 | 0.69 | 0.477192 |
Target: 5'- -aGAGGUagaacaGGGGCCGGC-CCGUCagaaguCGGg -3' miRNA: 3'- ggCUUCGg-----CCCUGGCCGuGGCAG------GCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 17430 | 0.69 | 0.477192 |
Target: 5'- aCGAAGUCGGGugCGGUGCUccaggCGGa -3' miRNA: 3'- gGCUUCGGCCCugGCCGUGGcag--GCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 44373 | 0.69 | 0.504731 |
Target: 5'- gCCGAccucGGUCuccuugacccaGGGuuCGGCACCGaCCGGg -3' miRNA: 3'- -GGCU----UCGG-----------CCCugGCCGUGGCaGGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 26094 | 0.68 | 0.513127 |
Target: 5'- gCCGAacaGGCCGGGuagaccaccgccaGCC-GCACCGcCCGc -3' miRNA: 3'- -GGCU---UCGGCCC-------------UGGcCGUGGCaGGCc -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 28395 | 0.68 | 0.514064 |
Target: 5'- -gGAAGCCGGG-CUGGuCGCCGaagUUGGu -3' miRNA: 3'- ggCUUCGGCCCuGGCC-GUGGCa--GGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 25746 | 0.68 | 0.514064 |
Target: 5'- uUCGccccGCCGGGGCCgccuugGGgGCCG-CCGGa -3' miRNA: 3'- -GGCuu--CGGCCCUGG------CCgUGGCaGGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 95541 | 0.68 | 0.517817 |
Target: 5'- uCCGAAGCUugggcuggguuccuaGGcGGCCaGGgGCCG-CCGGa -3' miRNA: 3'- -GGCUUCGG---------------CC-CUGG-CCgUGGCaGGCC- -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 68841 | 0.68 | 0.522523 |
Target: 5'- aCCGGuccugaucgcauaGGCCGGGcgcCCGGCcUCGUCCc- -3' miRNA: 3'- -GGCU-------------UCGGCCCu--GGCCGuGGCAGGcc -5' |
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20477 | 3' | -61.4 | NC_004688.1 | + | 92192 | 0.68 | 0.539597 |
Target: 5'- uCCGcAGUCGGGAaugccaggcagacgUCGGCACCGagaUCCa- -3' miRNA: 3'- -GGCuUCGGCCCU--------------GGCCGUGGC---AGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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