miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20477 5' -54.1 NC_004688.1 + 28158 0.66 0.931168
Target:  5'- cGuuGUUGGCGGUGccgcacaccaGUgaccaCGUCUCGc -3'
miRNA:   3'- aCggCAACCGCCAC----------UAaua--GCAGGGC- -5'
20477 5' -54.1 NC_004688.1 + 75652 0.66 0.914213
Target:  5'- cUGUCagaagGGCGGgg--UGUCGUCCCa -3'
miRNA:   3'- -ACGGcaa--CCGCCacuaAUAGCAGGGc -5'
20477 5' -54.1 NC_004688.1 + 82775 0.66 0.906797
Target:  5'- gUGCUGggUGGUGGUcauuuaccaguccGGUUgguagucGUCGUCCCa -3'
miRNA:   3'- -ACGGCa-ACCGCCA-------------CUAA-------UAGCAGGGc -5'
20477 5' -54.1 NC_004688.1 + 53734 0.67 0.895002
Target:  5'- aGCCGUgcuUGGUGGUGg----CuUCCCGg -3'
miRNA:   3'- aCGGCA---ACCGCCACuaauaGcAGGGC- -5'
20477 5' -54.1 NC_004688.1 + 42067 0.67 0.890894
Target:  5'- aGCCGUccucgaaaucgagcaUGGCGGgGAUcgacUUGUCCCc -3'
miRNA:   3'- aCGGCA---------------ACCGCCaCUAau--AGCAGGGc -5'
20477 5' -54.1 NC_004688.1 + 39689 0.67 0.880249
Target:  5'- gGCCGUccGGCGG-GGUUGguuucucgggccuUCGcCCCGc -3'
miRNA:   3'- aCGGCAa-CCGCCaCUAAU-------------AGCaGGGC- -5'
20477 5' -54.1 NC_004688.1 + 53479 0.69 0.779026
Target:  5'- uUGCgagGUUGGUGGgGGUUccGUCGUCUCGg -3'
miRNA:   3'- -ACGg--CAACCGCCaCUAA--UAGCAGGGC- -5'
20477 5' -54.1 NC_004688.1 + 39254 0.7 0.76941
Target:  5'- cGCCGUgacCGGUGGUUGUgGaCCCGc -3'
miRNA:   3'- aCGGCAaccGCCACUAAUAgCaGGGC- -5'
20477 5' -54.1 NC_004688.1 + 5871 0.71 0.688659
Target:  5'- aUGCCGUUgacGGCGGUGuuauggGUCGggacgaaCCCGu -3'
miRNA:   3'- -ACGGCAA---CCGCCACuaa---UAGCa------GGGC- -5'
20477 5' -54.1 NC_004688.1 + 43827 1.1 0.002777
Target:  5'- gUGCCGUUGGCGGUGAUUAUCGUCCCGg -3'
miRNA:   3'- -ACGGCAACCGCCACUAAUAGCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.