Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20479 | 3' | -61.5 | NC_004688.1 | + | 45058 | 1.08 | 0.000663 |
Target: 5'- gGCGCCGCGCCUUCCACUGCCCCCAUGc -3' miRNA: 3'- -CGCGGCGCGGAAGGUGACGGGGGUAC- -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 6699 | 0.73 | 0.233729 |
Target: 5'- -aGCCGCGCCg-CCGCgGCCCaCCAg- -3' miRNA: 3'- cgCGGCGCGGaaGGUGaCGGG-GGUac -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 22279 | 0.71 | 0.288931 |
Target: 5'- uCGCUGggaCGCCUUCCuCUGCuCCCCAa- -3' miRNA: 3'- cGCGGC---GCGGAAGGuGACG-GGGGUac -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 51977 | 0.7 | 0.338586 |
Target: 5'- uCGCCGCuGcCCUUCuCGCUGCCgCCGc- -3' miRNA: 3'- cGCGGCG-C-GGAAG-GUGACGGgGGUac -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 63955 | 0.68 | 0.437298 |
Target: 5'- cCGCCGCuGCCgaaCACgaucgcGCCCCCAc- -3' miRNA: 3'- cGCGGCG-CGGaagGUGa-----CGGGGGUac -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 80975 | 0.68 | 0.473693 |
Target: 5'- aGCGCUGUGCCccaucccugCCACUGCUUCgCAg- -3' miRNA: 3'- -CGCGGCGCGGaa-------GGUGACGGGG-GUac -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 26177 | 0.67 | 0.483029 |
Target: 5'- aUGCCgGUGCCgggCUGCUGCCUuuGUGg -3' miRNA: 3'- cGCGG-CGCGGaa-GGUGACGGGggUAC- -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 56110 | 0.67 | 0.501006 |
Target: 5'- gGCGCUG-GCCgguaUUCCcacucgcuuggcaGCUGCCCCUcgGg -3' miRNA: 3'- -CGCGGCgCGG----AAGG-------------UGACGGGGGuaC- -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 71117 | 0.67 | 0.511547 |
Target: 5'- cGCGCCGcCGCUgaugCCACaUGUCCaCgGUGu -3' miRNA: 3'- -CGCGGC-GCGGaa--GGUG-ACGGG-GgUAC- -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 96332 | 0.67 | 0.530941 |
Target: 5'- aGgGgCGCGCCaaccUCCGCgGCCUCCGa- -3' miRNA: 3'- -CgCgGCGCGGa---AGGUGaCGGGGGUac -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 20842 | 0.67 | 0.530941 |
Target: 5'- -gGCCGCGCCagUCCGCa-CCCUCGc- -3' miRNA: 3'- cgCGGCGCGGa-AGGUGacGGGGGUac -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 52739 | 0.66 | 0.537793 |
Target: 5'- uCGCCGCGCCgaUCCGCgaaUGCugggggccggacucCCCgCAUGa -3' miRNA: 3'- cGCGGCGCGGa-AGGUG---ACG--------------GGG-GUAC- -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 20543 | 0.66 | 0.550596 |
Target: 5'- aGCGgCGUGCCcUCCAggGCCUUgAUGg -3' miRNA: 3'- -CGCgGCGCGGaAGGUgaCGGGGgUAC- -5' |
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20479 | 3' | -61.5 | NC_004688.1 | + | 93914 | 0.66 | 0.600579 |
Target: 5'- aGCGCCaaccagugcGCGCCagggCCA--GCCCCCGg- -3' miRNA: 3'- -CGCGG---------CGCGGaa--GGUgaCGGGGGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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