Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20479 | 5' | -56.7 | NC_004688.1 | + | 56995 | 0.66 | 0.82957 |
Target: 5'- cGGUGuUGuGGAuuguguucACGGGGgcGGGCAgGGUu -3' miRNA: 3'- -UCGC-AC-CCU--------UGCUCCuuCCCGUgUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 17305 | 0.66 | 0.794011 |
Target: 5'- uGCGgaugccgGGGAuuGCGcGGAacAGGcaGCGCAGCg -3' miRNA: 3'- uCGCa------CCCU--UGCuCCU--UCC--CGUGUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 54229 | 0.66 | 0.794011 |
Target: 5'- -aCGUcGGGGAUGGGGAugaaucGGGCcCGGUg -3' miRNA: 3'- ucGCA-CCCUUGCUCCUu-----CCCGuGUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 86240 | 0.67 | 0.784721 |
Target: 5'- aGGCccGGGAGCucGucGAGGGGCAggccCAGCa -3' miRNA: 3'- -UCGcaCCCUUG--CucCUUCCCGU----GUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 58426 | 0.67 | 0.765724 |
Target: 5'- gGGCG-GGGAGCGcgccuacuGGGugauccucauGGGCACcGCg -3' miRNA: 3'- -UCGCaCCCUUGC--------UCCuu--------CCCGUGuCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 77404 | 0.68 | 0.70609 |
Target: 5'- gGGCGUcGGGGuCGAGGGguuGGGCG-AGUu -3' miRNA: 3'- -UCGCA-CCCUuGCUCCUu--CCCGUgUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 100637 | 0.68 | 0.675267 |
Target: 5'- -aCGUGGGuAACu-GGcGGGGCAUGGCa -3' miRNA: 3'- ucGCACCC-UUGcuCCuUCCCGUGUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 31609 | 0.68 | 0.675267 |
Target: 5'- uGGUG-GGGGGCGccGAAGauGGCGCGGUg -3' miRNA: 3'- -UCGCaCCCUUGCucCUUC--CCGUGUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 108016 | 0.69 | 0.664907 |
Target: 5'- uGCGgGcGGAACugucuGAGGuAGuGGCGCAGCa -3' miRNA: 3'- uCGCaC-CCUUG-----CUCCuUC-CCGUGUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 73603 | 0.71 | 0.540838 |
Target: 5'- gAGgGUGGGAucgauGCGGGGccGGGCccGCGGg -3' miRNA: 3'- -UCgCACCCU-----UGCUCCuuCCCG--UGUCg -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 33988 | 0.71 | 0.510787 |
Target: 5'- gGGCGUcGGGGGCGucaaauccGGGucAGGGUcagGCAGCg -3' miRNA: 3'- -UCGCA-CCCUUGC--------UCCu-UCCCG---UGUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 61234 | 0.71 | 0.500924 |
Target: 5'- cGCccuGGAugAUGAGGAAGGGCGgGGCg -3' miRNA: 3'- uCGcacCCU--UGCUCCUUCCCGUgUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 39788 | 0.73 | 0.443671 |
Target: 5'- cGGCGUcugcgacugcGGGggUGAGGAgugcgAGGGUgaggGCGGCu -3' miRNA: 3'- -UCGCA----------CCCuuGCUCCU-----UCCCG----UGUCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 87799 | 0.74 | 0.34913 |
Target: 5'- gAGUucGGGAACGAGGGAGcGCGCuGCg -3' miRNA: 3'- -UCGcaCCCUUGCUCCUUCcCGUGuCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 6528 | 0.77 | 0.244837 |
Target: 5'- gGGCGUGcGGua-GAGGAucAGGGCGCgAGCg -3' miRNA: 3'- -UCGCAC-CCuugCUCCU--UCCCGUG-UCG- -5' |
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20479 | 5' | -56.7 | NC_004688.1 | + | 45024 | 1.11 | 0.001221 |
Target: 5'- uAGCGUGGGAACGAGGAAGGGCACAGCu -3' miRNA: 3'- -UCGCACCCUUGCUCCUUCCCGUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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