miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2048 3' -57.4 NC_001347.2 + 134992 0.66 0.93006
Target:  5'- aCGGGGACgugCGUUCGUGCCG--GGGAAAa -3'
miRNA:   3'- -GCCUCUG---GCAGGUGCGGCaaCCCUUU- -5'
2048 3' -57.4 NC_001347.2 + 42903 0.66 0.914102
Target:  5'- aCGGAGaggaGCUGUCCGcCGCC---GGGAAGg -3'
miRNA:   3'- -GCCUC----UGGCAGGU-GCGGcaaCCCUUU- -5'
2048 3' -57.4 NC_001347.2 + 152582 0.66 0.908341
Target:  5'- --aGGACuCGcUCACGUCGUUGGGAAu -3'
miRNA:   3'- gccUCUG-GCaGGUGCGGCAACCCUUu -5'
2048 3' -57.4 NC_001347.2 + 178066 0.66 0.908341
Target:  5'- gGGGGACUGaUCCAgGCgucggCGUUGGGcAAGg -3'
miRNA:   3'- gCCUCUGGC-AGGUgCG-----GCAACCC-UUU- -5'
2048 3' -57.4 NC_001347.2 + 177623 0.67 0.896166
Target:  5'- uGGuGGCCGcgcUCUugGCCGagccgGGGAGGa -3'
miRNA:   3'- gCCuCUGGC---AGGugCGGCaa---CCCUUU- -5'
2048 3' -57.4 NC_001347.2 + 189480 0.67 0.889756
Target:  5'- aCGGuGA-CGUCgACGCCGguucaGGGAAGg -3'
miRNA:   3'- -GCCuCUgGCAGgUGCGGCaa---CCCUUU- -5'
2048 3' -57.4 NC_001347.2 + 189131 0.67 0.868566
Target:  5'- uCGGAGGCCGUCgacuccaCGCGCCGc-GGuGAc- -3'
miRNA:   3'- -GCCUCUGGCAG-------GUGCGGCaaCC-CUuu -5'
2048 3' -57.4 NC_001347.2 + 78368 0.68 0.862053
Target:  5'- gGuGGGACCcggCgGCGCCGUggUGGGAGGa -3'
miRNA:   3'- gC-CUCUGGca-GgUGCGGCA--ACCCUUU- -5'
2048 3' -57.4 NC_001347.2 + 14136 0.68 0.847027
Target:  5'- uCGGAGcACUuUCCGCGgCGcUUGGGAGc -3'
miRNA:   3'- -GCCUC-UGGcAGGUGCgGC-AACCCUUu -5'
2048 3' -57.4 NC_001347.2 + 2021 0.69 0.780227
Target:  5'- aCGGAGGCCG-CCggcggggacGCGCCGUgcgcgauagcGGGAGc -3'
miRNA:   3'- -GCCUCUGGCaGG---------UGCGGCAa---------CCCUUu -5'
2048 3' -57.4 NC_001347.2 + 65038 0.7 0.771242
Target:  5'- cCGGAGGCCGccaacUCCGUGCUGUUGGa--- -3'
miRNA:   3'- -GCCUCUGGC-----AGGUGCGGCAACCcuuu -5'
2048 3' -57.4 NC_001347.2 + 66093 0.7 0.743628
Target:  5'- cCGGAGGCUGUCagaGCGCC---GGGAGc -3'
miRNA:   3'- -GCCUCUGGCAGg--UGCGGcaaCCCUUu -5'
2048 3' -57.4 NC_001347.2 + 40695 0.73 0.587886
Target:  5'- cCGG-GGCUGUUCGCGCCGcguagGGGAGGu -3'
miRNA:   3'- -GCCuCUGGCAGGUGCGGCaa---CCCUUU- -5'
2048 3' -57.4 NC_001347.2 + 14539 0.77 0.36465
Target:  5'- cCGcGAG-CCGUUgACGCCGUUGGGAu- -3'
miRNA:   3'- -GC-CUCuGGCAGgUGCGGCAACCCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.