miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20480 3' -59.3 NC_004688.1 + 35780 0.66 0.718594
Target:  5'- aCGACgACGCCCcccCGGc-CCcGGCCGa -3'
miRNA:   3'- -GCUGgUGUGGGu--GCCaaGGaCCGGCa -5'
20480 3' -59.3 NC_004688.1 + 67380 0.66 0.718594
Target:  5'- gGGCCAUACCCugGGcagCCgaaaGCUGa -3'
miRNA:   3'- gCUGGUGUGGGugCCaa-GGac--CGGCa -5'
20480 3' -59.3 NC_004688.1 + 1851 0.66 0.708698
Target:  5'- -uGCCAgGCCCGCGGUUCgc-GCCa- -3'
miRNA:   3'- gcUGGUgUGGGUGCCAAGgacCGGca -5'
20480 3' -59.3 NC_004688.1 + 3536 0.66 0.708698
Target:  5'- cCGACCACACCaaucgCACGGUga---GCCGUc -3'
miRNA:   3'- -GCUGGUGUGG-----GUGCCAaggacCGGCA- -5'
20480 3' -59.3 NC_004688.1 + 25947 0.66 0.698739
Target:  5'- aGGCUGC-CCCAa---UCCUGGCCGg -3'
miRNA:   3'- gCUGGUGuGGGUgccaAGGACCGGCa -5'
20480 3' -59.3 NC_004688.1 + 26359 0.66 0.688724
Target:  5'- cCGAgcCCGCGCCCAUGGcgcCCUGGauGg -3'
miRNA:   3'- -GCU--GGUGUGGGUGCCaa-GGACCggCa -5'
20480 3' -59.3 NC_004688.1 + 9592 0.67 0.648288
Target:  5'- aGGCCACGCacgCCGCGGUguaggCCUcGGuuGc -3'
miRNA:   3'- gCUGGUGUG---GGUGCCAa----GGA-CCggCa -5'
20480 3' -59.3 NC_004688.1 + 17691 0.68 0.597512
Target:  5'- aCGG-CGCGCuCCACgGGUUCCggcgcgGGCCGc -3'
miRNA:   3'- -GCUgGUGUG-GGUG-CCAAGGa-----CCGGCa -5'
20480 3' -59.3 NC_004688.1 + 77109 0.68 0.571298
Target:  5'- aCGGCCACGCaauuaucggucugcaCCACGaugUgCUGGCCGg -3'
miRNA:   3'- -GCUGGUGUG---------------GGUGCca-AgGACCGGCa -5'
20480 3' -59.3 NC_004688.1 + 56129 0.69 0.508204
Target:  5'- aGAUCACA-CUACGGUUUauggcgCUGGCCGg -3'
miRNA:   3'- gCUGGUGUgGGUGCCAAG------GACCGGCa -5'
20480 3' -59.3 NC_004688.1 + 79858 0.7 0.479636
Target:  5'- -aGCgACACCCACGGgcgCCcgucGGCCGa -3'
miRNA:   3'- gcUGgUGUGGGUGCCaa-GGa---CCGGCa -5'
20480 3' -59.3 NC_004688.1 + 71873 0.7 0.464725
Target:  5'- uGAUCGCgGCCCGacaugaagaugaucuCGGgcucUUCCUGGCCGUg -3'
miRNA:   3'- gCUGGUG-UGGGU---------------GCC----AAGGACCGGCA- -5'
20480 3' -59.3 NC_004688.1 + 6632 0.71 0.433867
Target:  5'- uCGACCACGCgguCCACGGggUCC-GuGCCGg -3'
miRNA:   3'- -GCUGGUGUG---GGUGCCa-AGGaC-CGGCa -5'
20480 3' -59.3 NC_004688.1 + 45513 1.07 0.001579
Target:  5'- cCGACCACACCCACGGUUCCUGGCCGUc -3'
miRNA:   3'- -GCUGGUGUGGGUGCCAAGGACCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.