miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20489 3' -55.6 NC_004688.1 + 102798 0.67 0.829853
Target:  5'- uUGGCGGCGcACUUcccuGAcuacagcguccgcGCCAGUGgcCCGUu -3'
miRNA:   3'- -ACCGCCGCaUGAG----UU-------------UGGUCAC--GGCG- -5'
20489 3' -55.6 NC_004688.1 + 45080 0.67 0.830712
Target:  5'- gUGGCGGCcUGCUUAGcguUguGgcGCCGCg -3'
miRNA:   3'- -ACCGCCGcAUGAGUUu--GguCa-CGGCG- -5'
20489 3' -55.6 NC_004688.1 + 17576 0.67 0.830712
Target:  5'- aGGaGGCGcGCUC-AGCCAGgagcGCgGCg -3'
miRNA:   3'- aCCgCCGCaUGAGuUUGGUCa---CGgCG- -5'
20489 3' -55.6 NC_004688.1 + 108699 0.67 0.794956
Target:  5'- cGaGCGGCGUGguauccgCAAACCGuUGcCCGCa -3'
miRNA:   3'- aC-CGCCGCAUga-----GUUUGGUcAC-GGCG- -5'
20489 3' -55.6 NC_004688.1 + 46524 0.67 0.825529
Target:  5'- cGGCguGGCGUGCgucccggucgacggUAAGCCGaucGCCGCg -3'
miRNA:   3'- aCCG--CCGCAUGa-------------GUUUGGUca-CGGCG- -5'
20489 3' -55.6 NC_004688.1 + 80532 0.67 0.794956
Target:  5'- --cCGGCGUcCUCGAuggccacggucaGCCGGUGCCa- -3'
miRNA:   3'- accGCCGCAuGAGUU------------UGGUCACGGcg -5'
20489 3' -55.6 NC_004688.1 + 67404 0.68 0.766485
Target:  5'- aGGCGGCGgugccAUUCAcauACCGG-GCCa- -3'
miRNA:   3'- aCCGCCGCa----UGAGUu--UGGUCaCGGcg -5'
20489 3' -55.6 NC_004688.1 + 83972 0.68 0.776114
Target:  5'- -cGCGGCGUACUCc--UCGGacaGCUGCg -3'
miRNA:   3'- acCGCCGCAUGAGuuuGGUCa--CGGCG- -5'
20489 3' -55.6 NC_004688.1 + 37676 0.68 0.736882
Target:  5'- gGGCGGUGUugaUCAuuUCGGUGaUCGCc -3'
miRNA:   3'- aCCGCCGCAug-AGUuuGGUCAC-GGCG- -5'
20489 3' -55.6 NC_004688.1 + 3991 0.69 0.706417
Target:  5'- cGGCGGCGUGCacgCGGcccACCAcccuauUGCCGg -3'
miRNA:   3'- aCCGCCGCAUGa--GUU---UGGUc-----ACGGCg -5'
20489 3' -55.6 NC_004688.1 + 51905 0.69 0.72681
Target:  5'- aGGCGuucCGUGCgauuGCCuugaAGUGCCGCg -3'
miRNA:   3'- aCCGCc--GCAUGaguuUGG----UCACGGCG- -5'
20489 3' -55.6 NC_004688.1 + 10647 0.69 0.682643
Target:  5'- aGcGCGGCGUugUCcgcGGCCuggaucgcggucgaGGUGCCGg -3'
miRNA:   3'- aC-CGCCGCAugAGu--UUGG--------------UCACGGCg -5'
20489 3' -55.6 NC_004688.1 + 28750 0.69 0.685759
Target:  5'- gUGGuCGGCGUGC-CAu-CgAG-GCCGCg -3'
miRNA:   3'- -ACC-GCCGCAUGaGUuuGgUCaCGGCG- -5'
20489 3' -55.6 NC_004688.1 + 12278 0.69 0.685759
Target:  5'- aUGGUcugGGCGUugUCGuacccgauGCCGG-GCUGCu -3'
miRNA:   3'- -ACCG---CCGCAugAGUu-------UGGUCaCGGCG- -5'
20489 3' -55.6 NC_004688.1 + 10877 0.69 0.689908
Target:  5'- cGGUGGCGcgcacGCcgacgaccugguuguUCGAGCCGGUGCC-Cg -3'
miRNA:   3'- aCCGCCGCa----UG---------------AGUUUGGUCACGGcG- -5'
20489 3' -55.6 NC_004688.1 + 599 0.69 0.695083
Target:  5'- cUGGCGGagGUccuccagGCUCAuGACCGGUggGCCGUu -3'
miRNA:   3'- -ACCGCCg-CA-------UGAGU-UUGGUCA--CGGCG- -5'
20489 3' -55.6 NC_004688.1 + 102856 0.7 0.643958
Target:  5'- uUGGCGGCgGUAC-CAggaGACCGGa-CCGCu -3'
miRNA:   3'- -ACCGCCG-CAUGaGU---UUGGUCacGGCG- -5'
20489 3' -55.6 NC_004688.1 + 11597 0.71 0.601996
Target:  5'- gGGCGaGCGc-CUCAAacugcgGCCAGaucUGCCGCu -3'
miRNA:   3'- aCCGC-CGCauGAGUU------UGGUC---ACGGCG- -5'
20489 3' -55.6 NC_004688.1 + 90219 0.71 0.591544
Target:  5'- cGGCgGGCGgucgUCGGuCCAGuUGCCGCg -3'
miRNA:   3'- aCCG-CCGCaug-AGUUuGGUC-ACGGCG- -5'
20489 3' -55.6 NC_004688.1 + 3284 0.71 0.570741
Target:  5'- gGGCGGUGUAgUCAAcGCCGa-GUCGCg -3'
miRNA:   3'- aCCGCCGCAUgAGUU-UGGUcaCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.