miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2049 3' -55 NC_001347.2 + 104324 0.65 0.985959
Target:  5'- cGGCacGAcGAGGugGAccgCUggauccgGCACGCGGc -3'
miRNA:   3'- -CCG--CU-CUCCugCUa--GAag-----CGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 165932 0.65 0.985473
Target:  5'- uGGCuuacGGGGACGAUgUaccaguuuaauaggUCGCuCGCGGc -3'
miRNA:   3'- -CCGcu--CUCCUGCUAgA--------------AGCGuGCGCC- -5'
2049 3' -55 NC_001347.2 + 82906 0.66 0.984974
Target:  5'- aGCGAGcGGGCcgccgCUaucgccauggcccccUCGCACGUGGa -3'
miRNA:   3'- cCGCUCuCCUGcua--GA---------------AGCGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 198380 0.66 0.982469
Target:  5'- aGGUGGGuGG-CGcgCgggUCGCGCaacaGCGGa -3'
miRNA:   3'- -CCGCUCuCCuGCuaGa--AGCGUG----CGCC- -5'
2049 3' -55 NC_001347.2 + 174636 0.66 0.980496
Target:  5'- cGGCGaAGGcGGuCGGUCUacgucuacUCGCcCGUGGu -3'
miRNA:   3'- -CCGC-UCU-CCuGCUAGA--------AGCGuGCGCC- -5'
2049 3' -55 NC_001347.2 + 173547 0.66 0.98029
Target:  5'- cGGCGGuGGuGGCGGcagccucUCUUCGCugGCc- -3'
miRNA:   3'- -CCGCUcUC-CUGCU-------AGAAGCGugCGcc -5'
2049 3' -55 NC_001347.2 + 140618 0.66 0.978362
Target:  5'- gGGCccGAGcGACGGUCUggguggCGguCGUGGu -3'
miRNA:   3'- -CCGcuCUC-CUGCUAGAa-----GCguGCGCC- -5'
2049 3' -55 NC_001347.2 + 113090 0.66 0.978362
Target:  5'- cGCGGGAagaacGGACGGcgacgCUggaagCGCAgGCGGc -3'
miRNA:   3'- cCGCUCU-----CCUGCUa----GAa----GCGUgCGCC- -5'
2049 3' -55 NC_001347.2 + 2373 0.67 0.972805
Target:  5'- uGGCGcuGGGACGcgaGUCggCGCccgccgccgaggccGCGCGGc -3'
miRNA:   3'- -CCGCucUCCUGC---UAGaaGCG--------------UGCGCC- -5'
2049 3' -55 NC_001347.2 + 158164 0.67 0.970926
Target:  5'- uGCGAGcgccaucuGGACGcgCgcUCGCugGUGGc -3'
miRNA:   3'- cCGCUCu-------CCUGCuaGa-AGCGugCGCC- -5'
2049 3' -55 NC_001347.2 + 159267 0.67 0.970926
Target:  5'- aGGCGGcGAGG-CGAaaCUggUGCugGCGGc -3'
miRNA:   3'- -CCGCU-CUCCuGCUa-GAa-GCGugCGCC- -5'
2049 3' -55 NC_001347.2 + 208945 0.67 0.970093
Target:  5'- aGC-AGAGGugGAcucggauagagaccUCUggccagUCGUGCGCGGg -3'
miRNA:   3'- cCGcUCUCCugCU--------------AGA------AGCGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 184183 0.67 0.968083
Target:  5'- uGGCuAGAGGucCGucuUCUUCGUcgGCGCGa -3'
miRNA:   3'- -CCGcUCUCCu-GCu--AGAAGCG--UGCGCc -5'
2049 3' -55 NC_001347.2 + 142449 0.67 0.967788
Target:  5'- cGGCGucgGGGGuGGCGGUCUUCuucucgGCGaguccguCGCGGg -3'
miRNA:   3'- -CCGC---UCUC-CUGCUAGAAG------CGU-------GCGCC- -5'
2049 3' -55 NC_001347.2 + 228067 0.67 0.961815
Target:  5'- uGGCGAGGGGAUGGguuuauuggauaUCggugaaGCAgCGUGGc -3'
miRNA:   3'- -CCGCUCUCCUGCU------------AGaag---CGU-GCGCC- -5'
2049 3' -55 NC_001347.2 + 77522 0.68 0.958381
Target:  5'- uGGcCGAGGaGugGAag-UUGCACGCGGc -3'
miRNA:   3'- -CC-GCUCUcCugCUagaAGCGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 153010 0.68 0.958381
Target:  5'- cGGUGGGcAGGAUGcgguuGUCcUCGCACGaGGu -3'
miRNA:   3'- -CCGCUC-UCCUGC-----UAGaAGCGUGCgCC- -5'
2049 3' -55 NC_001347.2 + 84347 0.68 0.958027
Target:  5'- gGGUGGGuGGACGuugugaaAUCUUCuuuugGCGCGGa -3'
miRNA:   3'- -CCGCUCuCCUGC-------UAGAAGcg---UGCGCC- -5'
2049 3' -55 NC_001347.2 + 77230 0.68 0.956222
Target:  5'- cGCGAGAGGgacuugaccuugucgACGAUCcgUUCGaucUugGCGGc -3'
miRNA:   3'- cCGCUCUCC---------------UGCUAG--AAGC---GugCGCC- -5'
2049 3' -55 NC_001347.2 + 5622 0.68 0.950891
Target:  5'- cGCGAGaAGGcccgcACGGUCUUC-CAaGCGGg -3'
miRNA:   3'- cCGCUC-UCC-----UGCUAGAAGcGUgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.