miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2049 3' -55 NC_001347.2 + 178085 0.74 0.683811
Target:  5'- cGGCGuugGGcaAGGugGcgCUUCGCuACGCGGu -3'
miRNA:   3'- -CCGC---UC--UCCugCuaGAAGCG-UGCGCC- -5'
2049 3' -55 NC_001347.2 + 159689 0.74 0.703183
Target:  5'- cGUG-GAGGGCGGUCgcaGCACGCGu -3'
miRNA:   3'- cCGCuCUCCUGCUAGaagCGUGCGCc -5'
2049 3' -55 NC_001347.2 + 197020 0.74 0.71279
Target:  5'- uGCGAcacGGGGACGcgCcgcaggaUCGCACGCGGc -3'
miRNA:   3'- cCGCU---CUCCUGCuaGa------AGCGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 2110 0.74 0.731806
Target:  5'- cGGCGGGGGcGCGAUUUgcgUGCcuaACGCGGa -3'
miRNA:   3'- -CCGCUCUCcUGCUAGAa--GCG---UGCGCC- -5'
2049 3' -55 NC_001347.2 + 73563 0.73 0.750502
Target:  5'- cGGCGAc-GGAUGGgcg-CGCACGCGGa -3'
miRNA:   3'- -CCGCUcuCCUGCUagaaGCGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 136138 0.71 0.852402
Target:  5'- gGGCGGGAGGcagGCGGgagCgggCGCAgcgUGCGGa -3'
miRNA:   3'- -CCGCUCUCC---UGCUa--Gaa-GCGU---GCGCC- -5'
2049 3' -55 NC_001347.2 + 154983 0.71 0.867122
Target:  5'- uGGUGAGuacGGugGAUUgcgugccgcCGCACGUGGu -3'
miRNA:   3'- -CCGCUCu--CCugCUAGaa-------GCGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 77099 0.7 0.874191
Target:  5'- aGGCG-GAGGAgugaaCGGUCgucgUUGC-CGCGGc -3'
miRNA:   3'- -CCGCuCUCCU-----GCUAGa---AGCGuGCGCC- -5'
2049 3' -55 NC_001347.2 + 144221 0.7 0.90043
Target:  5'- aGGaCGuGGAGGAC-AUCUUCGUGCuCGGg -3'
miRNA:   3'- -CC-GC-UCUCCUGcUAGAAGCGUGcGCC- -5'
2049 3' -55 NC_001347.2 + 142390 0.69 0.916217
Target:  5'- gGGgGGGAGGugcACGAccugucggcgcUCUUCGCgcccaguggcgucgGCGCGGc -3'
miRNA:   3'- -CCgCUCUCC---UGCU-----------AGAAGCG--------------UGCGCC- -5'
2049 3' -55 NC_001347.2 + 113156 0.69 0.917873
Target:  5'- aGGCGAcGGGGACGAagagggaaCGCGCGCc- -3'
miRNA:   3'- -CCGCU-CUCCUGCUagaa----GCGUGCGcc -5'
2049 3' -55 NC_001347.2 + 126020 0.69 0.93334
Target:  5'- cGGCGGGuGG-CGcccGUCUUCGC-CGUGa -3'
miRNA:   3'- -CCGCUCuCCuGC---UAGAAGCGuGCGCc -5'
2049 3' -55 NC_001347.2 + 78609 0.69 0.93334
Target:  5'- cGGCGcGAGGACuccauGAgcCUgggCGCGCGCGa -3'
miRNA:   3'- -CCGCuCUCCUG-----CUa-GAa--GCGUGCGCc -5'
2049 3' -55 NC_001347.2 + 156812 0.69 0.93334
Target:  5'- cGGCGGGccAGGACG-UCggagggucCGCGCGuCGGc -3'
miRNA:   3'- -CCGCUC--UCCUGCuAGaa------GCGUGC-GCC- -5'
2049 3' -55 NC_001347.2 + 68097 0.68 0.946411
Target:  5'- cGGCaGAcGAGGACGAcuuuuugcgccguUCUUCGUgACGCu- -3'
miRNA:   3'- -CCG-CU-CUCCUGCU-------------AGAAGCG-UGCGcc -5'
2049 3' -55 NC_001347.2 + 184145 0.68 0.950891
Target:  5'- aGGUGAGGGGgucGCGG-CgaccCGCACaGCGGu -3'
miRNA:   3'- -CCGCUCUCC---UGCUaGaa--GCGUG-CGCC- -5'
2049 3' -55 NC_001347.2 + 5622 0.68 0.950891
Target:  5'- cGCGAGaAGGcccgcACGGUCUUC-CAaGCGGg -3'
miRNA:   3'- cCGCUC-UCC-----UGCUAGAAGcGUgCGCC- -5'
2049 3' -55 NC_001347.2 + 128463 0.68 0.950891
Target:  5'- cGGCGcGAcGGCGcg---CGCACGCGGg -3'
miRNA:   3'- -CCGCuCUcCUGCuagaaGCGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 77230 0.68 0.956222
Target:  5'- cGCGAGAGGgacuugaccuugucgACGAUCcgUUCGaucUugGCGGc -3'
miRNA:   3'- cCGCUCUCC---------------UGCUAG--AAGC---GugCGCC- -5'
2049 3' -55 NC_001347.2 + 84347 0.68 0.958027
Target:  5'- gGGUGGGuGGACGuugugaaAUCUUCuuuugGCGCGGa -3'
miRNA:   3'- -CCGCUCuCCUGC-------UAGAAGcg---UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.