miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2049 3' -55 NC_001347.2 + 144221 0.7 0.90043
Target:  5'- aGGaCGuGGAGGAC-AUCUUCGUGCuCGGg -3'
miRNA:   3'- -CC-GC-UCUCCUGcUAGAAGCGUGcGCC- -5'
2049 3' -55 NC_001347.2 + 153010 0.68 0.958381
Target:  5'- cGGUGGGcAGGAUGcgguuGUCcUCGCACGaGGu -3'
miRNA:   3'- -CCGCUC-UCCUGC-----UAGaAGCGUGCgCC- -5'
2049 3' -55 NC_001347.2 + 154983 0.71 0.867122
Target:  5'- uGGUGAGuacGGugGAUUgcgugccgcCGCACGUGGu -3'
miRNA:   3'- -CCGCUCu--CCugCUAGaa-------GCGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 156812 0.69 0.93334
Target:  5'- cGGCGGGccAGGACG-UCggagggucCGCGCGuCGGc -3'
miRNA:   3'- -CCGCUC--UCCUGCuAGaa------GCGUGC-GCC- -5'
2049 3' -55 NC_001347.2 + 158164 0.67 0.970926
Target:  5'- uGCGAGcgccaucuGGACGcgCgcUCGCugGUGGc -3'
miRNA:   3'- cCGCUCu-------CCUGCuaGa-AGCGugCGCC- -5'
2049 3' -55 NC_001347.2 + 159267 0.67 0.970926
Target:  5'- aGGCGGcGAGG-CGAaaCUggUGCugGCGGc -3'
miRNA:   3'- -CCGCU-CUCCuGCUa-GAa-GCGugCGCC- -5'
2049 3' -55 NC_001347.2 + 159689 0.74 0.703183
Target:  5'- cGUG-GAGGGCGGUCgcaGCACGCGu -3'
miRNA:   3'- cCGCuCUCCUGCUAGaagCGUGCGCc -5'
2049 3' -55 NC_001347.2 + 165932 0.65 0.985473
Target:  5'- uGGCuuacGGGGACGAUgUaccaguuuaauaggUCGCuCGCGGc -3'
miRNA:   3'- -CCGcu--CUCCUGCUAgA--------------AGCGuGCGCC- -5'
2049 3' -55 NC_001347.2 + 173547 0.66 0.98029
Target:  5'- cGGCGGuGGuGGCGGcagccucUCUUCGCugGCc- -3'
miRNA:   3'- -CCGCUcUC-CUGCU-------AGAAGCGugCGcc -5'
2049 3' -55 NC_001347.2 + 174636 0.66 0.980496
Target:  5'- cGGCGaAGGcGGuCGGUCUacgucuacUCGCcCGUGGu -3'
miRNA:   3'- -CCGC-UCU-CCuGCUAGA--------AGCGuGCGCC- -5'
2049 3' -55 NC_001347.2 + 178085 0.74 0.683811
Target:  5'- cGGCGuugGGcaAGGugGcgCUUCGCuACGCGGu -3'
miRNA:   3'- -CCGC---UC--UCCugCuaGAAGCG-UGCGCC- -5'
2049 3' -55 NC_001347.2 + 184145 0.68 0.950891
Target:  5'- aGGUGAGGGGgucGCGG-CgaccCGCACaGCGGu -3'
miRNA:   3'- -CCGCUCUCC---UGCUaGaa--GCGUG-CGCC- -5'
2049 3' -55 NC_001347.2 + 184183 0.67 0.968083
Target:  5'- uGGCuAGAGGucCGucuUCUUCGUcgGCGCGa -3'
miRNA:   3'- -CCGcUCUCCu-GCu--AGAAGCG--UGCGCc -5'
2049 3' -55 NC_001347.2 + 197020 0.74 0.71279
Target:  5'- uGCGAcacGGGGACGcgCcgcaggaUCGCACGCGGc -3'
miRNA:   3'- cCGCU---CUCCUGCuaGa------AGCGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 198380 0.66 0.982469
Target:  5'- aGGUGGGuGG-CGcgCgggUCGCGCaacaGCGGa -3'
miRNA:   3'- -CCGCUCuCCuGCuaGa--AGCGUG----CGCC- -5'
2049 3' -55 NC_001347.2 + 208945 0.67 0.970093
Target:  5'- aGC-AGAGGugGAcucggauagagaccUCUggccagUCGUGCGCGGg -3'
miRNA:   3'- cCGcUCUCCugCU--------------AGA------AGCGUGCGCC- -5'
2049 3' -55 NC_001347.2 + 228067 0.67 0.961815
Target:  5'- uGGCGAGGGGAUGGguuuauuggauaUCggugaaGCAgCGUGGc -3'
miRNA:   3'- -CCGCUCUCCUGCU------------AGaag---CGU-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.