Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2049 | 3' | -55 | NC_001347.2 | + | 136138 | 0.71 | 0.852402 |
Target: 5'- gGGCGGGAGGcagGCGGgagCgggCGCAgcgUGCGGa -3' miRNA: 3'- -CCGCUCUCC---UGCUa--Gaa-GCGU---GCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 128463 | 0.68 | 0.950891 |
Target: 5'- cGGCGcGAcGGCGcg---CGCACGCGGg -3' miRNA: 3'- -CCGCuCUcCUGCuagaaGCGUGCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 126020 | 0.69 | 0.93334 |
Target: 5'- cGGCGGGuGG-CGcccGUCUUCGC-CGUGa -3' miRNA: 3'- -CCGCUCuCCuGC---UAGAAGCGuGCGCc -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 113156 | 0.69 | 0.917873 |
Target: 5'- aGGCGAcGGGGACGAagagggaaCGCGCGCc- -3' miRNA: 3'- -CCGCU-CUCCUGCUagaa----GCGUGCGcc -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 113090 | 0.66 | 0.978362 |
Target: 5'- cGCGGGAagaacGGACGGcgacgCUggaagCGCAgGCGGc -3' miRNA: 3'- cCGCUCU-----CCUGCUa----GAa----GCGUgCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 104324 | 0.65 | 0.985959 |
Target: 5'- cGGCacGAcGAGGugGAccgCUggauccgGCACGCGGc -3' miRNA: 3'- -CCG--CU-CUCCugCUa--GAag-----CGUGCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 84347 | 0.68 | 0.958027 |
Target: 5'- gGGUGGGuGGACGuugugaaAUCUUCuuuugGCGCGGa -3' miRNA: 3'- -CCGCUCuCCUGC-------UAGAAGcg---UGCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 82906 | 0.66 | 0.984974 |
Target: 5'- aGCGAGcGGGCcgccgCUaucgccauggcccccUCGCACGUGGa -3' miRNA: 3'- cCGCUCuCCUGcua--GA---------------AGCGUGCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 78609 | 0.69 | 0.93334 |
Target: 5'- cGGCGcGAGGACuccauGAgcCUgggCGCGCGCGa -3' miRNA: 3'- -CCGCuCUCCUG-----CUa-GAa--GCGUGCGCc -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 77522 | 0.68 | 0.958381 |
Target: 5'- uGGcCGAGGaGugGAag-UUGCACGCGGc -3' miRNA: 3'- -CC-GCUCUcCugCUagaAGCGUGCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 77230 | 0.68 | 0.956222 |
Target: 5'- cGCGAGAGGgacuugaccuugucgACGAUCcgUUCGaucUugGCGGc -3' miRNA: 3'- cCGCUCUCC---------------UGCUAG--AAGC---GugCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 77099 | 0.7 | 0.874191 |
Target: 5'- aGGCG-GAGGAgugaaCGGUCgucgUUGC-CGCGGc -3' miRNA: 3'- -CCGCuCUCCU-----GCUAGa---AGCGuGCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 73563 | 0.73 | 0.750502 |
Target: 5'- cGGCGAc-GGAUGGgcg-CGCACGCGGa -3' miRNA: 3'- -CCGCUcuCCUGCUagaaGCGUGCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 68097 | 0.68 | 0.946411 |
Target: 5'- cGGCaGAcGAGGACGAcuuuuugcgccguUCUUCGUgACGCu- -3' miRNA: 3'- -CCG-CU-CUCCUGCU-------------AGAAGCG-UGCGcc -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 5622 | 0.68 | 0.950891 |
Target: 5'- cGCGAGaAGGcccgcACGGUCUUC-CAaGCGGg -3' miRNA: 3'- cCGCUC-UCC-----UGCUAGAAGcGUgCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 2373 | 0.67 | 0.972805 |
Target: 5'- uGGCGcuGGGACGcgaGUCggCGCccgccgccgaggccGCGCGGc -3' miRNA: 3'- -CCGCucUCCUGC---UAGaaGCG--------------UGCGCC- -5' |
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2049 | 3' | -55 | NC_001347.2 | + | 2110 | 0.74 | 0.731806 |
Target: 5'- cGGCGGGGGcGCGAUUUgcgUGCcuaACGCGGa -3' miRNA: 3'- -CCGCUCUCcUGCUAGAa--GCG---UGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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