miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20492 5' -59.1 NC_004688.1 + 41928 0.66 0.641339
Target:  5'- -cGGUUgCCCGGCCAGaACGGaucGCGGUa -3'
miRNA:   3'- caUCGAgGGGCCGGUUcUGUC---CGUCA- -5'
20492 5' -59.1 NC_004688.1 + 3729 0.67 0.620565
Target:  5'- uGUGGCcuUCCCCGcGCUgcuGGuuGCAGGCGGc -3'
miRNA:   3'- -CAUCG--AGGGGC-CGGu--UC--UGUCCGUCa -5'
20492 5' -59.1 NC_004688.1 + 26594 0.67 0.610187
Target:  5'- --uGCUUUCCGGCCGuuccgccaaGGGCGGGCu-- -3'
miRNA:   3'- cauCGAGGGGCCGGU---------UCUGUCCGuca -5'
20492 5' -59.1 NC_004688.1 + 31049 0.67 0.610187
Target:  5'- uGUAGCcguuggugCCCCcGCCGAGGCuGGCGa- -3'
miRNA:   3'- -CAUCGa-------GGGGcCGGUUCUGuCCGUca -5'
20492 5' -59.1 NC_004688.1 + 84418 0.67 0.599827
Target:  5'- --cGCUCCaggCGGCCcuucuGGcGCAGGCAGg -3'
miRNA:   3'- cauCGAGGg--GCCGGu----UC-UGUCCGUCa -5'
20492 5' -59.1 NC_004688.1 + 96292 0.67 0.579187
Target:  5'- -aAGgUCCCCGGCCcccGCGGGUgaAGUa -3'
miRNA:   3'- caUCgAGGGGCCGGuucUGUCCG--UCA- -5'
20492 5' -59.1 NC_004688.1 + 103123 0.68 0.538427
Target:  5'- -aAGCUCgCCGGCUAcugGGGCGGugaGCAGg -3'
miRNA:   3'- caUCGAGgGGCCGGU---UCUGUC---CGUCa -5'
20492 5' -59.1 NC_004688.1 + 65572 0.69 0.469773
Target:  5'- --cGCaUCCCCGGCCAguaauccccgaGGuGCAGGguGUc -3'
miRNA:   3'- cauCG-AGGGGCCGGU-----------UC-UGUCCguCA- -5'
20492 5' -59.1 NC_004688.1 + 92361 0.69 0.469773
Target:  5'- ---cCUCCgUGGgCGGGGCGGGCAGUg -3'
miRNA:   3'- caucGAGGgGCCgGUUCUGUCCGUCA- -5'
20492 5' -59.1 NC_004688.1 + 99990 0.72 0.309962
Target:  5'- -gAGCUcCCCCGGCCGGaAC-GGCAGa -3'
miRNA:   3'- caUCGA-GGGGCCGGUUcUGuCCGUCa -5'
20492 5' -59.1 NC_004688.1 + 57652 1.06 0.001383
Target:  5'- gGUAGCUCCCCGGCCAAGACAGGCAGUu -3'
miRNA:   3'- -CAUCGAGGGGCCGGUUCUGUCCGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.