miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20494 3' -64.9 NC_004688.1 + 21396 0.66 0.427995
Target:  5'- -cCUGCUggUCGUCguccaaaagGCCGGgGuuGGGGa -3'
miRNA:   3'- uaGACGG--AGCAG---------CGGCCgCggCCCCg -5'
20494 3' -64.9 NC_004688.1 + 16958 0.66 0.422864
Target:  5'- cGUCgGCCuguUCGgggcCGCuggcgggcuucaacaCGGCGCCGGGGa -3'
miRNA:   3'- -UAGaCGG---AGCa---GCG---------------GCCGCGGCCCCg -5'
20494 3' -64.9 NC_004688.1 + 73504 0.66 0.411038
Target:  5'- ---aGCCUUGgugcaCGCCGcgcccuGCGgCGGGGCa -3'
miRNA:   3'- uagaCGGAGCa----GCGGC------CGCgGCCCCG- -5'
20494 3' -64.9 NC_004688.1 + 100599 0.67 0.386401
Target:  5'- -aCUGCUgg--CGCUGGCGCUcaccgcccuggGGGGCu -3'
miRNA:   3'- uaGACGGagcaGCGGCCGCGG-----------CCCCG- -5'
20494 3' -64.9 NC_004688.1 + 106309 0.67 0.386401
Target:  5'- ---cGUCUa-UCGCgCGGCGCCuGGGGUa -3'
miRNA:   3'- uagaCGGAgcAGCG-GCCGCGG-CCCCG- -5'
20494 3' -64.9 NC_004688.1 + 43733 0.67 0.378408
Target:  5'- -cCUGCCUgCGUaGcCCGcGgGCCaGGGGCg -3'
miRNA:   3'- uaGACGGA-GCAgC-GGC-CgCGG-CCCCG- -5'
20494 3' -64.9 NC_004688.1 + 5195 0.67 0.370526
Target:  5'- gGUCcGCUUCGaCGCCaGCGa-GGGGCu -3'
miRNA:   3'- -UAGaCGGAGCaGCGGcCGCggCCCCG- -5'
20494 3' -64.9 NC_004688.1 + 10926 0.68 0.311596
Target:  5'- uUCU-CCagggCGcUGCCGGCGCUGGuGGCa -3'
miRNA:   3'- uAGAcGGa---GCaGCGGCCGCGGCC-CCG- -5'
20494 3' -64.9 NC_004688.1 + 25446 0.68 0.30475
Target:  5'- -gUUGCCccCGacgaucCGCCGaacGCGCCGGGGCc -3'
miRNA:   3'- uaGACGGa-GCa-----GCGGC---CGCGGCCCCG- -5'
20494 3' -64.9 NC_004688.1 + 25754 0.69 0.298021
Target:  5'- ---cGaCCUCGuUCGCCc-CGCCGGGGCc -3'
miRNA:   3'- uagaC-GGAGC-AGCGGccGCGGCCCCG- -5'
20494 3' -64.9 NC_004688.1 + 7623 0.69 0.298021
Target:  5'- ---cGCCUCGUCGCgGGCacugauguaGCCGaaGGCa -3'
miRNA:   3'- uagaCGGAGCAGCGgCCG---------CGGCc-CCG- -5'
20494 3' -64.9 NC_004688.1 + 5006 0.69 0.291408
Target:  5'- gGUUUGCCcgUCGUCaaacgucaGCCGGUaGCaGGGGCg -3'
miRNA:   3'- -UAGACGG--AGCAG--------CGGCCG-CGgCCCCG- -5'
20494 3' -64.9 NC_004688.1 + 96815 0.69 0.28491
Target:  5'- uUCUGCC-CGUgGuUCGGCGCCcGGuGCa -3'
miRNA:   3'- uAGACGGaGCAgC-GGCCGCGGcCC-CG- -5'
20494 3' -64.9 NC_004688.1 + 54491 0.7 0.248315
Target:  5'- ---cGCCUUGaCGuuGGCGCCGGaGGa -3'
miRNA:   3'- uagaCGGAGCaGCggCCGCGGCC-CCg -5'
20494 3' -64.9 NC_004688.1 + 16202 0.7 0.23701
Target:  5'- gAUgUGCgUCGa-GCUGGCGgCGGGGCc -3'
miRNA:   3'- -UAgACGgAGCagCGGCCGCgGCCCCG- -5'
20494 3' -64.9 NC_004688.1 + 20908 0.7 0.231521
Target:  5'- cGUCgGCCaUC-UCGCCGGCgaccgcaacgGCCGuGGGCg -3'
miRNA:   3'- -UAGaCGG-AGcAGCGGCCG----------CGGC-CCCG- -5'
20494 3' -64.9 NC_004688.1 + 26192 0.7 0.22614
Target:  5'- -cCUGCCgcacCGggcaUGCCGGUGCCGGGcuGCu -3'
miRNA:   3'- uaGACGGa---GCa---GCGGCCGCGGCCC--CG- -5'
20494 3' -64.9 NC_004688.1 + 27566 0.71 0.222962
Target:  5'- uUCUG-CUCGUCGCCcgacgggguccagcgGGCccgGCCGGGGa -3'
miRNA:   3'- uAGACgGAGCAGCGG---------------CCG---CGGCCCCg -5'
20494 3' -64.9 NC_004688.1 + 28444 0.71 0.200804
Target:  5'- ---gGCC-CGUCGCUGaagaagaacGUGCCGGGGCc -3'
miRNA:   3'- uagaCGGaGCAGCGGC---------CGCGGCCCCG- -5'
20494 3' -64.9 NC_004688.1 + 37311 0.71 0.191381
Target:  5'- uUCaaCCUCGUCGCCGGUGuuGGuGCc -3'
miRNA:   3'- uAGacGGAGCAGCGGCCGCggCCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.