miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20494 5' -56.3 NC_004688.1 + 84238 0.66 0.853618
Target:  5'- uCCACCuuggacuuggccuGCGG-CUgCCGCuucacUGGAAGGGu -3'
miRNA:   3'- -GGUGG-------------CGCCaGAgGGCGu----AUCUUCCU- -5'
20494 5' -56.3 NC_004688.1 + 81488 0.66 0.846428
Target:  5'- uCCACCGUGG-UUCCCGaCccGGcgaAAGGAu -3'
miRNA:   3'- -GGUGGCGCCaGAGGGC-GuaUC---UUCCU- -5'
20494 5' -56.3 NC_004688.1 + 79475 0.67 0.824772
Target:  5'- aUCGCCGCGGUCUcggcugauaggccaCCCGCuccggcauucuuugcGGAgaccAGGAg -3'
miRNA:   3'- -GGUGGCGCCAGA--------------GGGCGua-------------UCU----UCCU- -5'
20494 5' -56.3 NC_004688.1 + 60811 0.67 0.822194
Target:  5'- gCCGCgGCGGUCgccaaugguccaggcCCCGCcgGGGAuGAa -3'
miRNA:   3'- -GGUGgCGCCAGa--------------GGGCGuaUCUUcCU- -5'
20494 5' -56.3 NC_004688.1 + 4888 0.67 0.82133
Target:  5'- cCCAUgGUGGUCcaCCCGCGcucGGaAAGGAu -3'
miRNA:   3'- -GGUGgCGCCAGa-GGGCGUa--UC-UUCCU- -5'
20494 5' -56.3 NC_004688.1 + 96320 0.67 0.812603
Target:  5'- aCCuCCGCGGcCUCCga-AUAGGAGGc -3'
miRNA:   3'- -GGuGGCGCCaGAGGgcgUAUCUUCCu -5'
20494 5' -56.3 NC_004688.1 + 55769 0.67 0.794658
Target:  5'- gCGCauCGGUgCUCCUGCuccucUAGAAGGAu -3'
miRNA:   3'- gGUGgcGCCA-GAGGGCGu----AUCUUCCU- -5'
20494 5' -56.3 NC_004688.1 + 53198 0.68 0.766642
Target:  5'- -gACCGCGGUacgCCCGCAUcGGccGGc -3'
miRNA:   3'- ggUGGCGCCAga-GGGCGUA-UCuuCCu -5'
20494 5' -56.3 NC_004688.1 + 61549 0.68 0.73753
Target:  5'- aUACCGCGGUacgCCCGCAUc--GGGu -3'
miRNA:   3'- gGUGGCGCCAga-GGGCGUAucuUCCu -5'
20494 5' -56.3 NC_004688.1 + 99661 0.69 0.717639
Target:  5'- aCGCUGCGGUggCUCaCCGUAgAGAuGGAc -3'
miRNA:   3'- gGUGGCGCCA--GAG-GGCGUaUCUuCCU- -5'
20494 5' -56.3 NC_004688.1 + 85285 0.69 0.707576
Target:  5'- uCCGCCuCGGcCUCCCGCAgccuGAuGGc -3'
miRNA:   3'- -GGUGGcGCCaGAGGGCGUau--CUuCCu -5'
20494 5' -56.3 NC_004688.1 + 51083 0.7 0.656474
Target:  5'- cCCGCCcgcgagggGUGGauUCUCCCGCcUGGAuGGAu -3'
miRNA:   3'- -GGUGG--------CGCC--AGAGGGCGuAUCUuCCU- -5'
20494 5' -56.3 NC_004688.1 + 13474 0.71 0.584312
Target:  5'- aUCACCGuCGGUCUCUCGCGgcuGAAa-- -3'
miRNA:   3'- -GGUGGC-GCCAGAGGGCGUau-CUUccu -5'
20494 5' -56.3 NC_004688.1 + 58788 1.11 0.001496
Target:  5'- aCCACCGCGGUCUCCCGCAUAGAAGGAg -3'
miRNA:   3'- -GGUGGCGCCAGAGGGCGUAUCUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.