miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20496 5' -54.6 NC_004688.1 + 109362 0.66 0.905121
Target:  5'- cUACGGCAacgaGUacGUGCGGguUGAGUa -3'
miRNA:   3'- -AUGCUGUgg--CAa-CACGCCguACUCGg -5'
20496 5' -54.6 NC_004688.1 + 31209 0.66 0.898558
Target:  5'- --gGAUACCaGUUGaaCGGC-UGGGCCg -3'
miRNA:   3'- augCUGUGG-CAACacGCCGuACUCGG- -5'
20496 5' -54.6 NC_004688.1 + 5879 0.66 0.877399
Target:  5'- aGCGcuccAUGCCGUUGacgGCGGUguuAUGGGUCg -3'
miRNA:   3'- aUGC----UGUGGCAACa--CGCCG---UACUCGG- -5'
20496 5' -54.6 NC_004688.1 + 72624 0.67 0.828929
Target:  5'- cGCGAUAUCGUc--GCGaGCAUG-GCCa -3'
miRNA:   3'- aUGCUGUGGCAacaCGC-CGUACuCGG- -5'
20496 5' -54.6 NC_004688.1 + 30256 0.67 0.828929
Target:  5'- gUACGGCGCCuuGUUGguggGCacaaagaccucGGCGUG-GCCg -3'
miRNA:   3'- -AUGCUGUGG--CAACa---CG-----------CCGUACuCGG- -5'
20496 5' -54.6 NC_004688.1 + 19867 0.68 0.820133
Target:  5'- gGCGccCGCCGUcaggGUGCGGUAcuuAGCCa -3'
miRNA:   3'- aUGCu-GUGGCAa---CACGCCGUac-UCGG- -5'
20496 5' -54.6 NC_004688.1 + 58393 0.69 0.743962
Target:  5'- --gGGCACCGcgGUGUGGCuggcGGGCUu -3'
miRNA:   3'- augCUGUGGCaaCACGCCGua--CUCGG- -5'
20496 5' -54.6 NC_004688.1 + 99936 0.69 0.733863
Target:  5'- gACGACcauCCGUUGaccGUGGCAgUGGGCa -3'
miRNA:   3'- aUGCUGu--GGCAACa--CGCCGU-ACUCGg -5'
20496 5' -54.6 NC_004688.1 + 36160 0.69 0.733863
Target:  5'- aACGACGCC-UUGcUGUGGC-UG-GCCg -3'
miRNA:   3'- aUGCUGUGGcAAC-ACGCCGuACuCGG- -5'
20496 5' -54.6 NC_004688.1 + 6183 0.71 0.618728
Target:  5'- gACGcCGCCGaagGUGUGGCAguaGGGCUg -3'
miRNA:   3'- aUGCuGUGGCaa-CACGCCGUa--CUCGG- -5'
20496 5' -54.6 NC_004688.1 + 59266 1.09 0.002407
Target:  5'- gUACGACACCGUUGUGCGGCAUGAGCCc -3'
miRNA:   3'- -AUGCUGUGGCAACACGCCGUACUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.