miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20497 5' -61.6 NC_004688.1 + 36084 0.66 0.616937
Target:  5'- gCGCCacGGCGGCCAugccgaucucGGggGUgagggugacgccaaaCUCCUCCu -3'
miRNA:   3'- -GCGG--CUGCCGGU----------CCuuCA---------------GAGGGGGu -5'
20497 5' -61.6 NC_004688.1 + 62425 0.66 0.602914
Target:  5'- cCGCCGGCucuuGGCCGGGgAAGUUUCUUa-- -3'
miRNA:   3'- -GCGGCUG----CCGGUCC-UUCAGAGGGggu -5'
20497 5' -61.6 NC_004688.1 + 1834 0.66 0.592921
Target:  5'- gCGCCaagcuugguGGCGGCgGcGAAGgcCUCCCCCGc -3'
miRNA:   3'- -GCGG---------CUGCCGgUcCUUCa-GAGGGGGU- -5'
20497 5' -61.6 NC_004688.1 + 28257 0.66 0.592921
Target:  5'- aGCCGAC-GCCGcGGuAGUCcUCgCCCAc -3'
miRNA:   3'- gCGGCUGcCGGU-CCuUCAG-AGgGGGU- -5'
20497 5' -61.6 NC_004688.1 + 22571 0.66 0.592921
Target:  5'- uGCCGGCGGCaaccugcuuaucCAGGGcgcGGacaucccgCUCCUCCAg -3'
miRNA:   3'- gCGGCUGCCG------------GUCCU---UCa-------GAGGGGGU- -5'
20497 5' -61.6 NC_004688.1 + 16479 0.66 0.573026
Target:  5'- -aCCGGCGGCCAGaGAGUUcCCgacaCCCAa -3'
miRNA:   3'- gcGGCUGCCGGUCcUUCAGaGG----GGGU- -5'
20497 5' -61.6 NC_004688.1 + 58811 0.66 0.562149
Target:  5'- uCGCCGGC-GCCGGGgccAucgccaccaccgcGGUCUCCCgCAu -3'
miRNA:   3'- -GCGGCUGcCGGUCC---U-------------UCAGAGGGgGU- -5'
20497 5' -61.6 NC_004688.1 + 88784 0.67 0.543499
Target:  5'- gGCCGGuCcaCCAGGuuGcUCUCCCCCGu -3'
miRNA:   3'- gCGGCU-GccGGUCCuuC-AGAGGGGGU- -5'
20497 5' -61.6 NC_004688.1 + 100538 0.67 0.524091
Target:  5'- gCGCCGGCcGCCGaacccGAGcccaUCUCCCCCAg -3'
miRNA:   3'- -GCGGCUGcCGGUcc---UUC----AGAGGGGGU- -5'
20497 5' -61.6 NC_004688.1 + 31635 0.68 0.440601
Target:  5'- gGCCGA-GGUCuuGGgcGcCUCCCCCGu -3'
miRNA:   3'- gCGGCUgCCGGu-CCuuCaGAGGGGGU- -5'
20497 5' -61.6 NC_004688.1 + 2233 0.69 0.414477
Target:  5'- cCGCCGGaauaucucGCCAGGAAGaaUCUCCCGc -3'
miRNA:   3'- -GCGGCUgc------CGGUCCUUCagAGGGGGU- -5'
20497 5' -61.6 NC_004688.1 + 25479 0.69 0.409368
Target:  5'- cCGCCGAaaGGCCAGuuggugacgaacaccGggGUUgCCCCCGa -3'
miRNA:   3'- -GCGGCUg-CCGGUC---------------CuuCAGaGGGGGU- -5'
20497 5' -61.6 NC_004688.1 + 86974 0.7 0.356613
Target:  5'- uCGCUGAucaCGGCC-GGAAGaccuccuUCUCCCCUg -3'
miRNA:   3'- -GCGGCU---GCCGGuCCUUC-------AGAGGGGGu -5'
20497 5' -61.6 NC_004688.1 + 78801 0.72 0.278693
Target:  5'- aGCCcgggcggGGCGGCCAGcauuAGGcUCUCCCCCGa -3'
miRNA:   3'- gCGG-------CUGCCGGUCc---UUC-AGAGGGGGU- -5'
20497 5' -61.6 NC_004688.1 + 60989 1.01 0.002547
Target:  5'- cCGCCGACGGCCAGGAAGUCUCCCCa- -3'
miRNA:   3'- -GCGGCUGCCGGUCCUUCAGAGGGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.