miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2050 5' -55.7 NC_001347.2 + 92457 0.66 0.959607
Target:  5'- aCGCUUGGCUUCauccuGGGGCAccaacauGCaGaCCUCGu -3'
miRNA:   3'- -GUGAACCGAAG-----UCUCGU-------CG-C-GGAGCc -5'
2050 5' -55.7 NC_001347.2 + 59116 0.66 0.948448
Target:  5'- aGCUgcGGCcaUCAGAGCAGCGg--CGGg -3'
miRNA:   3'- gUGAa-CCGa-AGUCUCGUCGCggaGCC- -5'
2050 5' -55.7 NC_001347.2 + 142423 0.66 0.944169
Target:  5'- gCGCccagUGGCgUCGGcGCGGCGUC-CGGc -3'
miRNA:   3'- -GUGa---ACCGaAGUCuCGUCGCGGaGCC- -5'
2050 5' -55.7 NC_001347.2 + 175041 0.67 0.939664
Target:  5'- aUAC-UGGUgaacgAGAGCGGCGCCgucuUCGGc -3'
miRNA:   3'- -GUGaACCGaag--UCUCGUCGCGG----AGCC- -5'
2050 5' -55.7 NC_001347.2 + 131852 0.67 0.934931
Target:  5'- uCAC-UGGCUUCGGccCGGUGCgaCGGa -3'
miRNA:   3'- -GUGaACCGAAGUCucGUCGCGgaGCC- -5'
2050 5' -55.7 NC_001347.2 + 39323 0.67 0.924779
Target:  5'- aUugUUGccGCUacUCGGAGgGGCGCC-CGGc -3'
miRNA:   3'- -GugAAC--CGA--AGUCUCgUCGCGGaGCC- -5'
2050 5' -55.7 NC_001347.2 + 197047 0.67 0.924779
Target:  5'- gCACgcGGCUgccgcaguUCAGcuCGGCGCuCUCGGa -3'
miRNA:   3'- -GUGaaCCGA--------AGUCucGUCGCG-GAGCC- -5'
2050 5' -55.7 NC_001347.2 + 2165 0.68 0.907832
Target:  5'- gACgcGGCagCAGcAGCGGCGCCgaCGGu -3'
miRNA:   3'- gUGaaCCGaaGUC-UCGUCGCGGa-GCC- -5'
2050 5' -55.7 NC_001347.2 + 199767 0.68 0.901729
Target:  5'- uCGCUcGGUUUCuuGGCGGCGCCggugccgcCGGu -3'
miRNA:   3'- -GUGAaCCGAAGucUCGUCGCGGa-------GCC- -5'
2050 5' -55.7 NC_001347.2 + 150857 0.68 0.888855
Target:  5'- cCGCUUugugcGuGCUUCGGuGC-GCGUCUCGGu -3'
miRNA:   3'- -GUGAA-----C-CGAAGUCuCGuCGCGGAGCC- -5'
2050 5' -55.7 NC_001347.2 + 7616 0.68 0.88209
Target:  5'- -uCUUGGcCUUCAGAGaCcGCGCCgUCGu -3'
miRNA:   3'- guGAACC-GAAGUCUC-GuCGCGG-AGCc -5'
2050 5' -55.7 NC_001347.2 + 26581 0.69 0.867927
Target:  5'- gGCgUGGCUUgGGAGCAcCGUCUCa- -3'
miRNA:   3'- gUGaACCGAAgUCUCGUcGCGGAGcc -5'
2050 5' -55.7 NC_001347.2 + 40510 0.7 0.812261
Target:  5'- gCACcgGGCUUCGGGaCGGUGUUUCGGc -3'
miRNA:   3'- -GUGaaCCGAAGUCUcGUCGCGGAGCC- -5'
2050 5' -55.7 NC_001347.2 + 140861 0.7 0.794836
Target:  5'- gACgaGGCccuggguuucguUUCGGAGguGCGCCUCa- -3'
miRNA:   3'- gUGaaCCG------------AAGUCUCguCGCGGAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.