miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20503 3' -58.8 NC_004688.1 + 53486 0.66 0.750651
Target:  5'- cCGG-GGGUUgcgagguuggUGGGGGUUCCGuCGUCu -3'
miRNA:   3'- -GCCaCCCAGaa--------AUUCCCGGGGC-GCGG- -5'
20503 3' -58.8 NC_004688.1 + 100573 0.66 0.750651
Target:  5'- uGGgGGGcuUCUUUGcGGcGauacugcggccCCCCGCGCCg -3'
miRNA:   3'- gCCaCCC--AGAAAUuCC-C-----------GGGGCGCGG- -5'
20503 3' -58.8 NC_004688.1 + 54203 0.66 0.719461
Target:  5'- cCGGUGGGUCUUgguguccuUcucgacguuccucacGAuGGCCCCguaaagcucccagauGCGCCc -3'
miRNA:   3'- -GCCACCCAGAA--------A---------------UUcCCGGGG---------------CGCGG- -5'
20503 3' -58.8 NC_004688.1 + 73601 0.66 0.712527
Target:  5'- gGGUGGGaUCgaugcggggccGGGCCCgCGgGUCa -3'
miRNA:   3'- gCCACCC-AGaaauu------CCCGGG-GCgCGG- -5'
20503 3' -58.8 NC_004688.1 + 82438 0.66 0.711533
Target:  5'- uGGUGGugcuccaguuGUCaUUGAGGGCCgggaUGuCGCCa -3'
miRNA:   3'- gCCACC----------CAGaAAUUCCCGGg---GC-GCGG- -5'
20503 3' -58.8 NC_004688.1 + 24207 0.68 0.640835
Target:  5'- -cGUGGGgaccgUUGccggugcccGGGGCCCCGC-CCg -3'
miRNA:   3'- gcCACCCaga--AAU---------UCCCGGGGCGcGG- -5'
20503 3' -58.8 NC_004688.1 + 87642 0.68 0.620449
Target:  5'- aCGGUcGGUC------GGCCCgCGCGCCa -3'
miRNA:   3'- -GCCAcCCAGaaauucCCGGG-GCGCGG- -5'
20503 3' -58.8 NC_004688.1 + 63340 0.68 0.600098
Target:  5'- aGGUaGGUgUUUAcGGGcgcGCCCCGgCGCCa -3'
miRNA:   3'- gCCAcCCAgAAAU-UCC---CGGGGC-GCGG- -5'
20503 3' -58.8 NC_004688.1 + 28513 0.69 0.569764
Target:  5'- gGGUGGGUCUUgaUGAGcGCCaCCuG-GCCa -3'
miRNA:   3'- gCCACCCAGAA--AUUCcCGG-GG-CgCGG- -5'
20503 3' -58.8 NC_004688.1 + 22503 0.69 0.549748
Target:  5'- gGGUGGaucUCUUUaucGAGGGCCuuG-GCCu -3'
miRNA:   3'- gCCACCc--AGAAA---UUCCCGGggCgCGG- -5'
20503 3' -58.8 NC_004688.1 + 48905 0.69 0.539821
Target:  5'- uGGUGGGUUcgc--GGuCCCUGUGCCg -3'
miRNA:   3'- gCCACCCAGaaauuCCcGGGGCGCGG- -5'
20503 3' -58.8 NC_004688.1 + 49159 0.72 0.384032
Target:  5'- gGGUGGaGUga-UGAGGuGCgCCGCGCCg -3'
miRNA:   3'- gCCACC-CAgaaAUUCC-CGgGGCGCGG- -5'
20503 3' -58.8 NC_004688.1 + 65891 1.12 0.000719
Target:  5'- cCGGUGGGUCUUUAAGGGCCCCGCGCCa -3'
miRNA:   3'- -GCCACCCAGAAAUUCCCGGGGCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.