miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20503 5' -49.9 NC_004688.1 + 5639 0.66 0.993792
Target:  5'- -aGACGCGGGcCuuAUGc-UCGCCGu -3'
miRNA:   3'- cgCUGCGCCCuGuuUACaaAGUGGUc -5'
20503 5' -49.9 NC_004688.1 + 65353 0.66 0.992806
Target:  5'- aCGACcauuuGCGGGACGGGgcgGUcgaUCACCGu -3'
miRNA:   3'- cGCUG-----CGCCCUGUUUa--CAa--AGUGGUc -5'
20503 5' -49.9 NC_004688.1 + 31940 0.66 0.99046
Target:  5'- aGCGGCGCaaGGAUGAug--UUCACCAa -3'
miRNA:   3'- -CGCUGCGc-CCUGUUuacaAAGUGGUc -5'
20503 5' -49.9 NC_004688.1 + 35980 0.66 0.988489
Target:  5'- -aGACGUGGGACucagcc--CACCAGc -3'
miRNA:   3'- cgCUGCGCCCUGuuuacaaaGUGGUC- -5'
20503 5' -49.9 NC_004688.1 + 52335 0.67 0.987553
Target:  5'- -aGGCGCGGGcggcGCAGAU---UCAUCGGa -3'
miRNA:   3'- cgCUGCGCCC----UGUUUAcaaAGUGGUC- -5'
20503 5' -49.9 NC_004688.1 + 62229 0.67 0.986559
Target:  5'- uGCGugGCGGGAUucccaca-CACCGa -3'
miRNA:   3'- -CGCugCGCCCUGuuuacaaaGUGGUc -5'
20503 5' -49.9 NC_004688.1 + 8765 0.67 0.985863
Target:  5'- uGCGGgccaGCGGGGugccCGcGUGgUUCACCAGa -3'
miRNA:   3'- -CGCUg---CGCCCU----GUuUACaAAGUGGUC- -5'
20503 5' -49.9 NC_004688.1 + 100289 0.67 0.985863
Target:  5'- cGCGACuGCGGacACAAGUGgg--GCCAGa -3'
miRNA:   3'- -CGCUG-CGCCc-UGUUUACaaagUGGUC- -5'
20503 5' -49.9 NC_004688.1 + 95434 0.67 0.984004
Target:  5'- cGCaaAUGCGGGGCAAAUucGggUgGCCGGa -3'
miRNA:   3'- -CGc-UGCGCCCUGUUUA--CaaAgUGGUC- -5'
20503 5' -49.9 NC_004688.1 + 6075 0.67 0.979737
Target:  5'- aGCGACcCGGGGguGAUGgucaUCGCCu- -3'
miRNA:   3'- -CGCUGcGCCCUguUUACaa--AGUGGuc -5'
20503 5' -49.9 NC_004688.1 + 62971 0.68 0.971826
Target:  5'- uCGGCGCGGcGGCGGAga--UCACCGc -3'
miRNA:   3'- cGCUGCGCC-CUGUUUacaaAGUGGUc -5'
20503 5' -49.9 NC_004688.1 + 3267 0.69 0.950222
Target:  5'- cCGAguCGCGGGGCAAAguacaacuccgCGCCAGg -3'
miRNA:   3'- cGCU--GCGCCCUGUUUacaaa------GUGGUC- -5'
20503 5' -49.9 NC_004688.1 + 96134 0.69 0.949781
Target:  5'- aGCGGCGCaGGGCAugaaGUagaagUCACCAa -3'
miRNA:   3'- -CGCUGCGcCCUGUuua-CAa----AGUGGUc -5'
20503 5' -49.9 NC_004688.1 + 91564 0.71 0.88802
Target:  5'- cCGGCGUGGGACAucuucgccCACCAGu -3'
miRNA:   3'- cGCUGCGCCCUGUuuacaaa-GUGGUC- -5'
20503 5' -49.9 NC_004688.1 + 75358 0.72 0.877669
Target:  5'- gGCGGCGcCGGcGAgaaGGAUGUUgccgaUCGCCAGg -3'
miRNA:   3'- -CGCUGC-GCC-CUg--UUUACAA-----AGUGGUC- -5'
20503 5' -49.9 NC_004688.1 + 64363 0.73 0.809883
Target:  5'- gGCc-CGCGGGGC-AAUGagUCACCAGg -3'
miRNA:   3'- -CGcuGCGCCCUGuUUACaaAGUGGUC- -5'
20503 5' -49.9 NC_004688.1 + 65857 1.13 0.005163
Target:  5'- gGCGACGCGGGACAAAUGUUUCACCAGg -3'
miRNA:   3'- -CGCUGCGCCCUGUUUACAAAGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.