Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20503 | 5' | -49.9 | NC_004688.1 | + | 5639 | 0.66 | 0.993792 |
Target: 5'- -aGACGCGGGcCuuAUGc-UCGCCGu -3' miRNA: 3'- cgCUGCGCCCuGuuUACaaAGUGGUc -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 65353 | 0.66 | 0.992806 |
Target: 5'- aCGACcauuuGCGGGACGGGgcgGUcgaUCACCGu -3' miRNA: 3'- cGCUG-----CGCCCUGUUUa--CAa--AGUGGUc -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 31940 | 0.66 | 0.99046 |
Target: 5'- aGCGGCGCaaGGAUGAug--UUCACCAa -3' miRNA: 3'- -CGCUGCGc-CCUGUUuacaAAGUGGUc -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 35980 | 0.66 | 0.988489 |
Target: 5'- -aGACGUGGGACucagcc--CACCAGc -3' miRNA: 3'- cgCUGCGCCCUGuuuacaaaGUGGUC- -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 52335 | 0.67 | 0.987553 |
Target: 5'- -aGGCGCGGGcggcGCAGAU---UCAUCGGa -3' miRNA: 3'- cgCUGCGCCC----UGUUUAcaaAGUGGUC- -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 62229 | 0.67 | 0.986559 |
Target: 5'- uGCGugGCGGGAUucccaca-CACCGa -3' miRNA: 3'- -CGCugCGCCCUGuuuacaaaGUGGUc -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 8765 | 0.67 | 0.985863 |
Target: 5'- uGCGGgccaGCGGGGugccCGcGUGgUUCACCAGa -3' miRNA: 3'- -CGCUg---CGCCCU----GUuUACaAAGUGGUC- -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 100289 | 0.67 | 0.985863 |
Target: 5'- cGCGACuGCGGacACAAGUGgg--GCCAGa -3' miRNA: 3'- -CGCUG-CGCCc-UGUUUACaaagUGGUC- -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 95434 | 0.67 | 0.984004 |
Target: 5'- cGCaaAUGCGGGGCAAAUucGggUgGCCGGa -3' miRNA: 3'- -CGc-UGCGCCCUGUUUA--CaaAgUGGUC- -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 6075 | 0.67 | 0.979737 |
Target: 5'- aGCGACcCGGGGguGAUGgucaUCGCCu- -3' miRNA: 3'- -CGCUGcGCCCUguUUACaa--AGUGGuc -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 62971 | 0.68 | 0.971826 |
Target: 5'- uCGGCGCGGcGGCGGAga--UCACCGc -3' miRNA: 3'- cGCUGCGCC-CUGUUUacaaAGUGGUc -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 3267 | 0.69 | 0.950222 |
Target: 5'- cCGAguCGCGGGGCAAAguacaacuccgCGCCAGg -3' miRNA: 3'- cGCU--GCGCCCUGUUUacaaa------GUGGUC- -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 96134 | 0.69 | 0.949781 |
Target: 5'- aGCGGCGCaGGGCAugaaGUagaagUCACCAa -3' miRNA: 3'- -CGCUGCGcCCUGUuua-CAa----AGUGGUc -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 91564 | 0.71 | 0.88802 |
Target: 5'- cCGGCGUGGGACAucuucgccCACCAGu -3' miRNA: 3'- cGCUGCGCCCUGUuuacaaa-GUGGUC- -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 75358 | 0.72 | 0.877669 |
Target: 5'- gGCGGCGcCGGcGAgaaGGAUGUUgccgaUCGCCAGg -3' miRNA: 3'- -CGCUGC-GCC-CUg--UUUACAA-----AGUGGUC- -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 64363 | 0.73 | 0.809883 |
Target: 5'- gGCc-CGCGGGGC-AAUGagUCACCAGg -3' miRNA: 3'- -CGcuGCGCCCUGuUUACaaAGUGGUC- -5' |
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20503 | 5' | -49.9 | NC_004688.1 | + | 65857 | 1.13 | 0.005163 |
Target: 5'- gGCGACGCGGGACAAAUGUUUCACCAGg -3' miRNA: 3'- -CGCUGCGCCCUGUUUACAAAGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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