Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20504 | 3' | -54.9 | NC_004688.1 | + | 25312 | 0.66 | 0.877294 |
Target: 5'- gCCGCGGUcCUccaucggGCGACCCUccggGCcacGUCc -3' miRNA: 3'- -GGCGCCAuGAa------CGCUGGGA----CGaa-CAG- -5' |
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20504 | 3' | -54.9 | NC_004688.1 | + | 60210 | 0.67 | 0.854225 |
Target: 5'- cCCGCGGUGCagguuggGCaGACCCacgaaucguguUGCaggGUCg -3' miRNA: 3'- -GGCGCCAUGaa-----CG-CUGGG-----------ACGaa-CAG- -5' |
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20504 | 3' | -54.9 | NC_004688.1 | + | 67718 | 0.67 | 0.829252 |
Target: 5'- gCCGCGucGUACUcGCGcucgGCCC-GCUUGUa -3' miRNA: 3'- -GGCGC--CAUGAaCGC----UGGGaCGAACAg -5' |
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20504 | 3' | -54.9 | NC_004688.1 | + | 16977 | 0.68 | 0.820539 |
Target: 5'- gCCGCGGUGCggGCGAUgacgucggCCUGUUcGg- -3' miRNA: 3'- -GGCGCCAUGaaCGCUG--------GGACGAaCag -5' |
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20504 | 3' | -54.9 | NC_004688.1 | + | 66186 | 0.69 | 0.774448 |
Target: 5'- cCCGUGG-GCUUGacCGGCaCCUGCUgaggcuggccccUGUCg -3' miRNA: 3'- -GGCGCCaUGAAC--GCUG-GGACGA------------ACAG- -5' |
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20504 | 3' | -54.9 | NC_004688.1 | + | 4338 | 0.7 | 0.714832 |
Target: 5'- aCCGUGGUACUUGCGAag--GCgaGUUc -3' miRNA: 3'- -GGCGCCAUGAACGCUgggaCGaaCAG- -5' |
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20504 | 3' | -54.9 | NC_004688.1 | + | 66280 | 1.12 | 0.001615 |
Target: 5'- gCCGCGGUACUUGCGACCCUGCUUGUCg -3' miRNA: 3'- -GGCGCCAUGAACGCUGGGACGAACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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