miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20504 5' -52.9 NC_004688.1 + 44898 0.66 0.955814
Target:  5'- --cAGCGACCGGGaUCGGcucGGUGucaGCCUc -3'
miRNA:   3'- cacUCGCUGGCCC-AGCUu--UUAC---UGGA- -5'
20504 5' -52.9 NC_004688.1 + 30347 0.66 0.951697
Target:  5'- -aGGGCaGGCCGuuuUUGAAGGUGACCUc -3'
miRNA:   3'- caCUCG-CUGGCcc-AGCUUUUACUGGA- -5'
20504 5' -52.9 NC_004688.1 + 42001 0.66 0.950844
Target:  5'- cUGGGCGGCgGGGUCGccgguccgGACg- -3'
miRNA:   3'- cACUCGCUGgCCCAGCuuuua---CUGga -5'
20504 5' -52.9 NC_004688.1 + 27539 0.66 0.937837
Target:  5'- -cGGGCccGGCCGGGgaucaGGAAGuUGACCg -3'
miRNA:   3'- caCUCG--CUGGCCCag---CUUUU-ACUGGa -5'
20504 5' -52.9 NC_004688.1 + 46624 0.67 0.932704
Target:  5'- aGUGGGCgGGCCGccccGUCaAGAAUGACCc -3'
miRNA:   3'- -CACUCG-CUGGCc---CAGcUUUUACUGGa -5'
20504 5' -52.9 NC_004688.1 + 77405 0.67 0.932704
Target:  5'- -cGGGCGuCgGGGUCGAGGGguugGGCg- -3'
miRNA:   3'- caCUCGCuGgCCCAGCUUUUa---CUGga -5'
20504 5' -52.9 NC_004688.1 + 45853 0.67 0.927313
Target:  5'- -gGAGCcuuGACUGGGgUGGAGAUGACa- -3'
miRNA:   3'- caCUCG---CUGGCCCaGCUUUUACUGga -5'
20504 5' -52.9 NC_004688.1 + 77942 0.67 0.921662
Target:  5'- aUGGGUGGCCGGG-CGGcgGGAUGguauucacGCCUu -3'
miRNA:   3'- cACUCGCUGGCCCaGCU--UUUAC--------UGGA- -5'
20504 5' -52.9 NC_004688.1 + 67269 0.68 0.867324
Target:  5'- cUGAGCucGACCGGGgaGAAGAUGggcGCCg -3'
miRNA:   3'- cACUCG--CUGGCCCagCUUUUAC---UGGa -5'
20504 5' -52.9 NC_004688.1 + 15924 0.69 0.858645
Target:  5'- cUGAGCGGCCcGGUCGAAuaacagauuugcgGcgGGCUa -3'
miRNA:   3'- cACUCGCUGGcCCAGCUU-------------UuaCUGGa -5'
20504 5' -52.9 NC_004688.1 + 58949 0.72 0.666859
Target:  5'- -gGAGCcuCCGGGUgCGAuGGAUGACCUg -3'
miRNA:   3'- caCUCGcuGGCCCA-GCU-UUUACUGGA- -5'
20504 5' -52.9 NC_004688.1 + 33620 0.75 0.519376
Target:  5'- --cAGCGcCCGGGUCGAGGGUGAUg- -3'
miRNA:   3'- cacUCGCuGGCCCAGCUUUUACUGga -5'
20504 5' -52.9 NC_004688.1 + 66245 1.07 0.00546
Target:  5'- uGUGAGCGACCGGGUCGAAAAUGACCUc -3'
miRNA:   3'- -CACUCGCUGGCCCAGCUUUUACUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.