Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20509 | 3' | -57.3 | NC_004688.1 | + | 70984 | 1.09 | 0.00163 |
Target: 5'- cUCCGCGUAGACGGCAGGGGUUGACGAg -3' miRNA: 3'- -AGGCGCAUCUGCCGUCCCCAACUGCU- -5' |
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20509 | 3' | -57.3 | NC_004688.1 | + | 83172 | 0.68 | 0.70831 |
Target: 5'- aUCCGCG--GGCGGUugGGGGuGUUGcGCGGg -3' miRNA: 3'- -AGGCGCauCUGCCG--UCCC-CAAC-UGCU- -5' |
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20509 | 3' | -57.3 | NC_004688.1 | + | 859 | 0.68 | 0.70831 |
Target: 5'- gCCGCGUGGA--GCAGGcGGUguggcagcggGACGGg -3' miRNA: 3'- aGGCGCAUCUgcCGUCC-CCAa---------CUGCU- -5' |
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20509 | 3' | -57.3 | NC_004688.1 | + | 55809 | 0.67 | 0.757546 |
Target: 5'- gCCGCGaccggcggcUAG-CGGCGcucgacacccGGGGUUGGCGc -3' miRNA: 3'- aGGCGC---------AUCuGCCGU----------CCCCAACUGCu -5' |
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20509 | 3' | -57.3 | NC_004688.1 | + | 89260 | 0.67 | 0.776522 |
Target: 5'- uUCgGCGUccaucuCGGC-GGGGUUGACa- -3' miRNA: 3'- -AGgCGCAucu---GCCGuCCCCAACUGcu -5' |
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20509 | 3' | -57.3 | NC_004688.1 | + | 11192 | 0.67 | 0.776522 |
Target: 5'- cCCaGCGUGGuCGGCAGGGucgGGuCGGu -3' miRNA: 3'- aGG-CGCAUCuGCCGUCCCcaaCU-GCU- -5' |
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20509 | 3' | -57.3 | NC_004688.1 | + | 6831 | 0.66 | 0.821524 |
Target: 5'- gCCGUG-GGACaGCAGcGGGUUuuccgggucGACGAg -3' miRNA: 3'- aGGCGCaUCUGcCGUC-CCCAA---------CUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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