Results 1 - 15 of 15 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 12613 | 0.67 | 0.901798 |
Target: 5'- cG-CGAC-ACUGCuCGAUCACcacgUCGUCGg -3' miRNA: 3'- aCaGCUGuUGACG-GCUGGUG----AGCAGU- -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 15382 | 0.68 | 0.841812 |
Target: 5'- -aUCGGCuacaagcaAGCUgGCCGGCUACUCGcCAa -3' miRNA: 3'- acAGCUG--------UUGA-CGGCUGGUGAGCaGU- -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 17722 | 0.71 | 0.729103 |
Target: 5'- -uUCGACGGcCUGCuCGAgCgGCUCGUCGg -3' miRNA: 3'- acAGCUGUU-GACG-GCU-GgUGAGCAGU- -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 17947 | 0.71 | 0.677345 |
Target: 5'- aGUCGugGccGCUGCCGugCAgUCGa-- -3' miRNA: 3'- aCAGCugU--UGACGGCugGUgAGCagu -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 30792 | 0.67 | 0.881042 |
Target: 5'- --aCGGCAGCUcGCCGaaGCCGCccucgggCGUCAg -3' miRNA: 3'- acaGCUGUUGA-CGGC--UGGUGa------GCAGU- -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 37892 | 0.7 | 0.74925 |
Target: 5'- gGUCGugGGCgagGUCGGCCuuaUCGUCc -3' miRNA: 3'- aCAGCugUUGa--CGGCUGGug-AGCAGu -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 40940 | 0.74 | 0.524541 |
Target: 5'- gGUCGGgGACUggagcgggugacucgGCCGuCCACUCGUCc -3' miRNA: 3'- aCAGCUgUUGA---------------CGGCuGGUGAGCAGu -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 42349 | 0.73 | 0.614023 |
Target: 5'- cGUCGAcCGACuUGCCGGCCACgagggcgCGgUCGg -3' miRNA: 3'- aCAGCU-GUUG-ACGGCUGGUGa------GC-AGU- -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 44578 | 0.71 | 0.729103 |
Target: 5'- aGUCGACGGCgggGCCGAUCGUguaCGUCc -3' miRNA: 3'- aCAGCUGUUGa--CGGCUGGUGa--GCAGu -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 53441 | 0.66 | 0.92032 |
Target: 5'- aUGUCGGCGAC-GCCGuGCCGCccCGg-- -3' miRNA: 3'- -ACAGCUGUUGaCGGC-UGGUGa-GCagu -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 53633 | 0.66 | 0.925987 |
Target: 5'- --cCGGCAuugACgucGCCGGCCuGCUUGUCGg -3' miRNA: 3'- acaGCUGU---UGa--CGGCUGG-UGAGCAGU- -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 55950 | 0.66 | 0.92032 |
Target: 5'- -cUCGAUAGC-GCCGcgaaGCCGCUCGaugUCAu -3' miRNA: 3'- acAGCUGUUGaCGGC----UGGUGAGC---AGU- -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 70945 | 1.09 | 0.003597 |
Target: 5'- cUGUCGACAACUGCCGACCACUCGUCAu -3' miRNA: 3'- -ACAGCUGUUGACGGCUGGUGAGCAGU- -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 89498 | 0.68 | 0.858164 |
Target: 5'- cGUCGACAuuCUGUCGACCcaggcgcaugaAUUCGgUCGu -3' miRNA: 3'- aCAGCUGUu-GACGGCUGG-----------UGAGC-AGU- -5' |
|||||||
20509 | 5' | -53.8 | NC_004688.1 | + | 104207 | 0.73 | 0.614023 |
Target: 5'- cGUCGACAAggccaUGcCCGACCAUUgGUCu -3' miRNA: 3'- aCAGCUGUUg----AC-GGCUGGUGAgCAGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home