Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2051 | 5' | -57.8 | NC_001347.2 | + | 140567 | 0.66 | 0.891564 |
|
Target: 5'- cGGGGUUc-CGGGCGGCGGUgCUggcgGGGg -3' miRNA: 3'- -UUUCAGacGCCCGCUGUCGgGAa---CCC- -5' |
|||||||
| 2051 | 5' | -57.8 | NC_001347.2 | + | 40098 | 0.67 | 0.863882 |
|
Target: 5'- cGGGg--GCgaGGGaCGACGGCCCUgGGGa -3' miRNA: 3'- uUUCagaCG--CCC-GCUGUCGGGAaCCC- -5' |
|||||||
| 2051 | 5' | -57.8 | NC_001347.2 | + | 144451 | 0.67 | 0.841041 |
|
Target: 5'- ----aCgGgGGGCGACGGCCCcgaGGGc -3' miRNA: 3'- uuucaGaCgCCCGCUGUCGGGaa-CCC- -5' |
|||||||
| 2051 | 5' | -57.8 | NC_001347.2 | + | 192663 | 0.67 | 0.830635 |
|
Target: 5'- ---uUCUGCGcGGCGACAGCUgCUUugugcacgaucuccGGGg -3' miRNA: 3'- uuucAGACGC-CCGCUGUCGG-GAA--------------CCC- -5' |
|||||||
| 2051 | 5' | -57.8 | NC_001347.2 | + | 100737 | 0.68 | 0.803827 |
|
Target: 5'- cGGGUCgcggacgacaaaaGCGGGCguccucgcccgucGAUAGCUCUUGGGu -3' miRNA: 3'- uUUCAGa------------CGCCCG-------------CUGUCGGGAACCC- -5' |
|||||||
| 2051 | 5' | -57.8 | NC_001347.2 | + | 182183 | 0.68 | 0.799497 |
|
Target: 5'- --cGUgUGUGGGC--CGGCCCUcGGGg -3' miRNA: 3'- uuuCAgACGCCCGcuGUCGGGAaCCC- -5' |
|||||||
| 2051 | 5' | -57.8 | NC_001347.2 | + | 149682 | 0.68 | 0.790731 |
|
Target: 5'- ----cCUGCGGGCagGugGGCCCgacgUGGa -3' miRNA: 3'- uuucaGACGCCCG--CugUCGGGa---ACCc -5' |
|||||||
| 2051 | 5' | -57.8 | NC_001347.2 | + | 140848 | 0.69 | 0.735594 |
|
Target: 5'- cAAGUUUGUGGaCGACgaGGCCCU-GGGu -3' miRNA: 3'- uUUCAGACGCCcGCUG--UCGGGAaCCC- -5' |
|||||||
| 2051 | 5' | -57.8 | NC_001347.2 | + | 63025 | 0.73 | 0.539453 |
|
Target: 5'- gGAAGUCUGUcuGGGCGACGcucuGCCCggcggcgucaUGGGu -3' miRNA: 3'- -UUUCAGACG--CCCGCUGU----CGGGa---------ACCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home