Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20514 | 3' | -56 | NC_004688.1 | + | 4317 | 0.66 | 0.858222 |
Target: 5'- aGUUCCgauucgaugcGGUCcAGGGUGUCgGCgAGGc -3' miRNA: 3'- -CAAGG----------UCAGcUUCCACAGgCGgUCCa -5' |
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20514 | 3' | -56 | NC_004688.1 | + | 28389 | 0.7 | 0.647797 |
Target: 5'- cGggCUGGUCGccgaaguuGGUGaCCGCCAGGUg -3' miRNA: 3'- -CaaGGUCAGCuu------CCACaGGCGGUCCA- -5' |
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20514 | 3' | -56 | NC_004688.1 | + | 39704 | 0.68 | 0.730391 |
Target: 5'- -cUCCuGUUGggGGUgggccGUCCGgCGGGg -3' miRNA: 3'- caAGGuCAGCuuCCA-----CAGGCgGUCCa -5' |
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20514 | 3' | -56 | NC_004688.1 | + | 39882 | 0.72 | 0.51347 |
Target: 5'- -gUCCAGUCGgcGccUGcUCCGCCGGGUc -3' miRNA: 3'- caAGGUCAGCuuCc-AC-AGGCGGUCCA- -5' |
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20514 | 3' | -56 | NC_004688.1 | + | 44784 | 0.66 | 0.858222 |
Target: 5'- --aCguGagGAAGGUGcCCGCCGcGGUg -3' miRNA: 3'- caaGguCagCUUCCACaGGCGGU-CCA- -5' |
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20514 | 3' | -56 | NC_004688.1 | + | 74760 | 1.08 | 0.002275 |
Target: 5'- cGUUCCAGUCGAAGGUGUCCGCCAGGUg -3' miRNA: 3'- -CAAGGUCAGCUUCCACAGGCGGUCCA- -5' |
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20514 | 3' | -56 | NC_004688.1 | + | 89446 | 0.73 | 0.436492 |
Target: 5'- -aUUCAGUCGAgGGGUGUCC-CCgAGGUa -3' miRNA: 3'- caAGGUCAGCU-UCCACAGGcGG-UCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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