miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20516 5' -57.8 NC_004688.1 + 58119 0.66 0.803008
Target:  5'- uGCgGgCG-CGGcCCCCGCCACGc--- -3'
miRNA:   3'- -CGgCaGCaGCCaGGGGCGGUGUaugu -5'
20516 5' -57.8 NC_004688.1 + 18581 0.66 0.779422
Target:  5'- cGCCGUCGUauaucaauucgccagUGGcCCCgGCCGCcauCAc -3'
miRNA:   3'- -CGGCAGCA---------------GCCaGGGgCGGUGuauGU- -5'
20516 5' -57.8 NC_004688.1 + 24200 0.66 0.775711
Target:  5'- aCCGUUGcCGGUgcccggggCCCCGCC-CGUGgGg -3'
miRNA:   3'- cGGCAGCaGCCA--------GGGGCGGuGUAUgU- -5'
20516 5' -57.8 NC_004688.1 + 86231 0.67 0.747266
Target:  5'- aGCuCGUCGagGGgcaggCCCagcacgccUGCCGCAUACGa -3'
miRNA:   3'- -CG-GCAGCagCCa----GGG--------GCGGUGUAUGU- -5'
20516 5' -57.8 NC_004688.1 + 35469 0.67 0.717917
Target:  5'- cCCG-CG-CGGUCCCaCGCCACcaccGCGa -3'
miRNA:   3'- cGGCaGCaGCCAGGG-GCGGUGua--UGU- -5'
20516 5' -57.8 NC_004688.1 + 39989 0.67 0.707975
Target:  5'- cGgUGUUGUgGcGUCCgCCGCCGCAgugGCGg -3'
miRNA:   3'- -CgGCAGCAgC-CAGG-GGCGGUGUa--UGU- -5'
20516 5' -57.8 NC_004688.1 + 28251 0.69 0.626883
Target:  5'- cGCCG-CGguaGUCCUCGCCcACGUGCGa -3'
miRNA:   3'- -CGGCaGCagcCAGGGGCGG-UGUAUGU- -5'
20516 5' -57.8 NC_004688.1 + 27887 0.7 0.586165
Target:  5'- cCCGUCGccgUGGUCCugaCCGUgGCGUACGg -3'
miRNA:   3'- cGGCAGCa--GCCAGG---GGCGgUGUAUGU- -5'
20516 5' -57.8 NC_004688.1 + 27711 0.7 0.586165
Target:  5'- gGCCGUC-UUGaUCUCCGCCGCGgagGCGg -3'
miRNA:   3'- -CGGCAGcAGCcAGGGGCGGUGUa--UGU- -5'
20516 5' -57.8 NC_004688.1 + 7638 0.71 0.487518
Target:  5'- cGCCGUCGgcCGGUucgCCUCGUCGCGgGCAc -3'
miRNA:   3'- -CGGCAGCa-GCCA---GGGGCGGUGUaUGU- -5'
20516 5' -57.8 NC_004688.1 + 90214 0.74 0.364465
Target:  5'- gGCgGUCGUCGGUCCaguUGCCGCGg--- -3'
miRNA:   3'- -CGgCAGCAGCCAGGg--GCGGUGUaugu -5'
20516 5' -57.8 NC_004688.1 + 76189 1.1 0.001334
Target:  5'- uGCCGUCGUCGGUCCCCGCCACAUACAa -3'
miRNA:   3'- -CGGCAGCAGCCAGGGGCGGUGUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.