Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20517 | 3' | -53.2 | NC_004688.1 | + | 1204 | 0.66 | 0.939686 |
Target: 5'- ---cUCCGGAgUCGC-CCACggGAAGGu -3' miRNA: 3'- caauAGGCCU-AGCGuGGUGggCUUCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 5995 | 0.68 | 0.885785 |
Target: 5'- --gGUCUGGAacaucacccUCGCGCCcggguuggGCCCGucGAGGa -3' miRNA: 3'- caaUAGGCCU---------AGCGUGG--------UGGGC--UUCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 11564 | 0.67 | 0.912249 |
Target: 5'- ----gCUGGAUCGC-UUGCCCGAAGu -3' miRNA: 3'- caauaGGCCUAGCGuGGUGGGCUUCc -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 15049 | 0.66 | 0.956731 |
Target: 5'- ------aGGAUUGCguacgguGCgGCCCGAAGGg -3' miRNA: 3'- caauaggCCUAGCG-------UGgUGGGCUUCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 17674 | 0.69 | 0.839082 |
Target: 5'- ---uUCCGGcgCGgGCCGCuuGgcGGg -3' miRNA: 3'- caauAGGCCuaGCgUGGUGggCuuCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 19098 | 0.66 | 0.95712 |
Target: 5'- --gAUCCGGGccacgCGCugCAUgauuUCGAAGGc -3' miRNA: 3'- caaUAGGCCUa----GCGugGUG----GGCUUCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 23185 | 0.68 | 0.899509 |
Target: 5'- ----aCUGGAUCuccaGCGCCGCCUGcuGGg -3' miRNA: 3'- caauaGGCCUAG----CGUGGUGGGCuuCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 25235 | 0.74 | 0.559024 |
Target: 5'- --cGUuuGGAUCGCuaaggACCugCUGAAGGa -3' miRNA: 3'- caaUAggCCUAGCG-----UGGugGGCUUCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 26085 | 0.69 | 0.860293 |
Target: 5'- ----gCCGGGUagaccaccgccagcCGCACCGCCCGcagcaccGGGGg -3' miRNA: 3'- caauaGGCCUA--------------GCGUGGUGGGC-------UUCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 26338 | 0.7 | 0.812942 |
Target: 5'- ----cCUGGAUgGCAgCGCCCGcAAGGc -3' miRNA: 3'- caauaGGCCUAgCGUgGUGGGC-UUCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 29895 | 0.69 | 0.839082 |
Target: 5'- --cGUCCGGggCGUACuCACCCuucGGGu -3' miRNA: 3'- caaUAGGCCuaGCGUG-GUGGGcu-UCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 30910 | 0.68 | 0.899509 |
Target: 5'- ----cCCGGAUCGaccgggguCACCACCgGGuuGGGg -3' miRNA: 3'- caauaGGCCUAGC--------GUGGUGGgCU--UCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 32192 | 0.68 | 0.878564 |
Target: 5'- --cGUCUGGccuUCGC-CCACCgCGAAGa -3' miRNA: 3'- caaUAGGCCu--AGCGuGGUGG-GCUUCc -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 48199 | 0.67 | 0.923984 |
Target: 5'- cGUg--CUGGAUgGcCGCCACCCGcccGGGc -3' miRNA: 3'- -CAauaGGCCUAgC-GUGGUGGGCu--UCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 53523 | 0.7 | 0.821842 |
Target: 5'- -----gCGGG-CGcCGCUACCCGAGGGg -3' miRNA: 3'- caauagGCCUaGC-GUGGUGGGCUUCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 56307 | 0.67 | 0.922288 |
Target: 5'- -aUAUCCGaGUCGCcggcuuccagcgcgGCCACCUcaaacaGAAGGg -3' miRNA: 3'- caAUAGGCcUAGCG--------------UGGUGGG------CUUCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 57217 | 0.7 | 0.794631 |
Target: 5'- ----aCCGucGUCGCAUCACCCGGgcGGGg -3' miRNA: 3'- caauaGGCc-UAGCGUGGUGGGCU--UCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 75976 | 0.67 | 0.929472 |
Target: 5'- --cGUCgCGGGUCGCAUC-CuuGAAGc -3' miRNA: 3'- caaUAG-GCCUAGCGUGGuGggCUUCc -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 76473 | 1.11 | 0.00333 |
Target: 5'- cGUUAUCCGGAUCGCACCACCCGAAGGu -3' miRNA: 3'- -CAAUAGGCCUAGCGUGGUGGGCUUCC- -5' |
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20517 | 3' | -53.2 | NC_004688.1 | + | 78137 | 0.65 | 0.96014 |
Target: 5'- uUUAUCCGGuugCGCAUaucggcuugauUCCGGAGGc -3' miRNA: 3'- cAAUAGGCCua-GCGUGgu---------GGGCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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