miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20517 5' -60.1 NC_004688.1 + 83324 0.66 0.639808
Target:  5'- --aGGCCuGGAGgagucgguCACCUCCUUGACGg -3'
miRNA:   3'- gcgCCGGcUCUC--------GUGGAGGAGCUGUu -5'
20517 5' -60.1 NC_004688.1 + 2527 0.66 0.629572
Target:  5'- gGUGGCCaucuGGGcGCGCCUCUcaucgUCGACGu -3'
miRNA:   3'- gCGCCGG----CUCuCGUGGAGG-----AGCUGUu -5'
20517 5' -60.1 NC_004688.1 + 71160 0.66 0.629572
Target:  5'- uCGgGcGCCGGGGGCGCgUCCagccauUCGGCu- -3'
miRNA:   3'- -GCgC-CGGCUCUCGUGgAGG------AGCUGuu -5'
20517 5' -60.1 NC_004688.1 + 59252 0.66 0.619338
Target:  5'- uGCGGCau-GAGC-CCgaCCUCGGCAu -3'
miRNA:   3'- gCGCCGgcuCUCGuGGa-GGAGCUGUu -5'
20517 5' -60.1 NC_004688.1 + 2422 0.66 0.619338
Target:  5'- gCGCGGCaucacAGGGCGCCa-CUCGGCGc -3'
miRNA:   3'- -GCGCCGgc---UCUCGUGGagGAGCUGUu -5'
20517 5' -60.1 NC_004688.1 + 83373 0.66 0.615246
Target:  5'- gGCGGCUGAucgugcccggcuGCugCUCCUCGuCGAu -3'
miRNA:   3'- gCGCCGGCUcu----------CGugGAGGAGCuGUU- -5'
20517 5' -60.1 NC_004688.1 + 23160 0.66 0.609113
Target:  5'- gGCGGCCgGAGAGagggAUUggagggCCUCGGCGAa -3'
miRNA:   3'- gCGCCGG-CUCUCg---UGGa-----GGAGCUGUU- -5'
20517 5' -60.1 NC_004688.1 + 58706 0.67 0.55839
Target:  5'- uCGCcauGCUGGGuGCGCUauUCCUCGGCGGa -3'
miRNA:   3'- -GCGc--CGGCUCuCGUGG--AGGAGCUGUU- -5'
20517 5' -60.1 NC_004688.1 + 31637 0.68 0.538412
Target:  5'- -uCGGCCGAGgucuugGGCGCCUCCccCGugGu -3'
miRNA:   3'- gcGCCGGCUC------UCGUGGAGGa-GCugUu -5'
20517 5' -60.1 NC_004688.1 + 16881 0.68 0.508929
Target:  5'- aCGUGGUCggaaaucuugGAGAGCGCCgacacgCaCUCGGCGAg -3'
miRNA:   3'- -GCGCCGG----------CUCUCGUGGa-----G-GAGCUGUU- -5'
20517 5' -60.1 NC_004688.1 + 67457 0.69 0.461407
Target:  5'- aGCGGCUGcAGGGCccgACCUgucCCUCGAUg- -3'
miRNA:   3'- gCGCCGGC-UCUCG---UGGA---GGAGCUGuu -5'
20517 5' -60.1 NC_004688.1 + 37630 0.7 0.399068
Target:  5'- gGUcGCCGGGGGcCGCC-CCUCGGCGGu -3'
miRNA:   3'- gCGcCGGCUCUC-GUGGaGGAGCUGUU- -5'
20517 5' -60.1 NC_004688.1 + 57944 0.71 0.342386
Target:  5'- cCGCGGcCCGGGGGCACCUcggggcugcuggCCUgUGGCGGu -3'
miRNA:   3'- -GCGCC-GGCUCUCGUGGA------------GGA-GCUGUU- -5'
20517 5' -60.1 NC_004688.1 + 20083 0.71 0.334778
Target:  5'- uCGgGGCCGcgGGAGCuuUCUCCUCGGCc- -3'
miRNA:   3'- -GCgCCGGC--UCUCGu-GGAGGAGCUGuu -5'
20517 5' -60.1 NC_004688.1 + 42776 0.72 0.327295
Target:  5'- aGgGGCCGAGAaguguugguaGCACUUUCUCGGCc- -3'
miRNA:   3'- gCgCCGGCUCU----------CGUGGAGGAGCUGuu -5'
20517 5' -60.1 NC_004688.1 + 93232 0.73 0.271907
Target:  5'- uGCGcCCGuGGGCACCgaCCUCGGCGAa -3'
miRNA:   3'- gCGCcGGCuCUCGUGGa-GGAGCUGUU- -5'
20517 5' -60.1 NC_004688.1 + 65675 0.74 0.234929
Target:  5'- uGCGGCCucggcgacgcgcuGAGccaacaggcGCGCCUCCUCGGCAAc -3'
miRNA:   3'- gCGCCGG-------------CUCu--------CGUGGAGGAGCUGUU- -5'
20517 5' -60.1 NC_004688.1 + 5727 0.76 0.183509
Target:  5'- aCGCGGCCGAGgggcggcAGCACCUUCgcugccuuucgCGGCAAa -3'
miRNA:   3'- -GCGCCGGCUC-------UCGUGGAGGa----------GCUGUU- -5'
20517 5' -60.1 NC_004688.1 + 76437 1.06 0.001181
Target:  5'- aCGCGGCCGAGAGCACCUCCUCGACAAa -3'
miRNA:   3'- -GCGCCGGCUCUCGUGGAGGAGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.