miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2052 3' -62.7 NC_001347.2 + 111267 0.66 0.763864
Target:  5'- aCGUcaUGCGCGGCGCcGUCUCCGAg- -3'
miRNA:   3'- -GUAccGCGCGCCGUGcCAGGGGCUgc -5'
2052 3' -62.7 NC_001347.2 + 82726 0.66 0.763864
Target:  5'- gGUGGUGCaGCGGCggcugaGCGGucaUCCUCgGACa -3'
miRNA:   3'- gUACCGCG-CGCCG------UGCC---AGGGG-CUGc -5'
2052 3' -62.7 NC_001347.2 + 1914 0.66 0.763864
Target:  5'- -cUGGCGCuG-GGCGCGGUgcugCCCGcGCGg -3'
miRNA:   3'- guACCGCG-CgCCGUGCCAg---GGGC-UGC- -5'
2052 3' -62.7 NC_001347.2 + 165853 0.66 0.755055
Target:  5'- uCAUGGCGaggccgGCGGCAgGGaCaCCGAUGu -3'
miRNA:   3'- -GUACCGCg-----CGCCGUgCCaGgGGCUGC- -5'
2052 3' -62.7 NC_001347.2 + 2160 0.66 0.754169
Target:  5'- --gGGCGgaCGCGGCagcagcaGCGG-CgCCGACGg -3'
miRNA:   3'- guaCCGC--GCGCCG-------UGCCaGgGGCUGC- -5'
2052 3' -62.7 NC_001347.2 + 93216 0.66 0.751505
Target:  5'- -cUGGCGacgagcucgcugaGCGGCAgCGGcggcaCCCCGGCu -3'
miRNA:   3'- guACCGCg------------CGCCGU-GCCa----GGGGCUGc -5'
2052 3' -62.7 NC_001347.2 + 28166 0.66 0.746154
Target:  5'- cCGUGGCGCGUG--ACGGcCCCCuACc -3'
miRNA:   3'- -GUACCGCGCGCcgUGCCaGGGGcUGc -5'
2052 3' -62.7 NC_001347.2 + 100876 0.66 0.746154
Target:  5'- --aGGCgGCGCGGCGCaG-CgCCGGCc -3'
miRNA:   3'- guaCCG-CGCGCCGUGcCaGgGGCUGc -5'
2052 3' -62.7 NC_001347.2 + 136041 0.66 0.746154
Target:  5'- --cGGUGCcCGGCccACGGcCCCgGAUGg -3'
miRNA:   3'- guaCCGCGcGCCG--UGCCaGGGgCUGC- -5'
2052 3' -62.7 NC_001347.2 + 168798 0.66 0.746154
Target:  5'- uCAUGGaCGCGC-GCGCGGUggCCaaaCGGCc -3'
miRNA:   3'- -GUACC-GCGCGcCGUGCCA--GGg--GCUGc -5'
2052 3' -62.7 NC_001347.2 + 189828 0.66 0.745259
Target:  5'- --aGGCG-GUGGUAggucgaccgcccuCGGUCCCCGugaGCGg -3'
miRNA:   3'- guaCCGCgCGCCGU-------------GCCAGGGGC---UGC- -5'
2052 3' -62.7 NC_001347.2 + 147902 0.66 0.737167
Target:  5'- -uUGGgGCcguggGUGGCGCGGUggcCUCCGugGu -3'
miRNA:   3'- guACCgCG-----CGCCGUGCCA---GGGGCugC- -5'
2052 3' -62.7 NC_001347.2 + 193829 0.66 0.736264
Target:  5'- --cGGCGCGCgaucuggGGCucuCGG-CCUCGAUGc -3'
miRNA:   3'- guaCCGCGCG-------CCGu--GCCaGGGGCUGC- -5'
2052 3' -62.7 NC_001347.2 + 81452 0.66 0.734456
Target:  5'- gCGUGGCGuCGCGaacguGCACGGugaaaguggcgucgUCgCUCGGCGg -3'
miRNA:   3'- -GUACCGC-GCGC-----CGUGCC--------------AG-GGGCUGC- -5'
2052 3' -62.7 NC_001347.2 + 99384 0.66 0.718968
Target:  5'- aAUGGCgGCGUGGCGuCaGUcucCCCCGAUu -3'
miRNA:   3'- gUACCG-CGCGCCGU-GcCA---GGGGCUGc -5'
2052 3' -62.7 NC_001347.2 + 144445 0.66 0.718968
Target:  5'- gAUGGCacGgGgGGCgACGG-CCCCGAgGg -3'
miRNA:   3'- gUACCG--CgCgCCG-UGCCaGGGGCUgC- -5'
2052 3' -62.7 NC_001347.2 + 157076 0.66 0.718968
Target:  5'- uGUGGCGCGgucaUGGCcaguCGucGUCUCCGACa -3'
miRNA:   3'- gUACCGCGC----GCCGu---GC--CAGGGGCUGc -5'
2052 3' -62.7 NC_001347.2 + 148604 0.66 0.718968
Target:  5'- --cGGCGUgaccgGCGGUGCGGUCgcggguggCCGGCGu -3'
miRNA:   3'- guaCCGCG-----CGCCGUGCCAGg-------GGCUGC- -5'
2052 3' -62.7 NC_001347.2 + 118556 0.66 0.709769
Target:  5'- gGUGGCGUGCcaccGCACGGacugaUCgUCGGCGu -3'
miRNA:   3'- gUACCGCGCGc---CGUGCC-----AGgGGCUGC- -5'
2052 3' -62.7 NC_001347.2 + 38372 0.67 0.700514
Target:  5'- cUAUcGCGCaCGGCGC-GUCCCCGcCGg -3'
miRNA:   3'- -GUAcCGCGcGCCGUGcCAGGGGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.