miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2052 5' -57.4 NC_001347.2 + 116885 0.66 0.934936
Target:  5'- gCCGCCcgCGCgcccccCGGgcaACCCGCCGc -3'
miRNA:   3'- gGGCGGuaGCGaca---GCU---UGGGUGGUa -5'
2052 5' -57.4 NC_001347.2 + 51142 0.66 0.934936
Target:  5'- -aCGCUgcGUCGCaGUCaGACCCACUAc -3'
miRNA:   3'- ggGCGG--UAGCGaCAGcUUGGGUGGUa -5'
2052 5' -57.4 NC_001347.2 + 68251 0.66 0.93006
Target:  5'- aCCGCCucCGCUGgaGGAUUCGCCGUg -3'
miRNA:   3'- gGGCGGuaGCGACagCUUGGGUGGUA- -5'
2052 5' -57.4 NC_001347.2 + 112056 0.66 0.93006
Target:  5'- aCCUGCCGUCGa----GGGCCCgGCCGUu -3'
miRNA:   3'- -GGGCGGUAGCgacagCUUGGG-UGGUA- -5'
2052 5' -57.4 NC_001347.2 + 198075 0.66 0.916345
Target:  5'- cCCCGCUGUCGCggcgGUCGcgacggugacgguCCCGCUc- -3'
miRNA:   3'- -GGGCGGUAGCGa---CAGCuu-----------GGGUGGua -5'
2052 5' -57.4 NC_001347.2 + 198035 0.66 0.914102
Target:  5'- uUCCGCCc-UGCUGUUucguCCCACCAUc -3'
miRNA:   3'- -GGGCGGuaGCGACAGcuu-GGGUGGUA- -5'
2052 5' -57.4 NC_001347.2 + 38446 0.66 0.914102
Target:  5'- gCCGCCGUCcCcGUCGccggcCCCGCCGc -3'
miRNA:   3'- gGGCGGUAGcGaCAGCuu---GGGUGGUa -5'
2052 5' -57.4 NC_001347.2 + 171961 0.66 0.908341
Target:  5'- gUuuGCCG-CGCUGcgagugguUCGAACgCACCAUc -3'
miRNA:   3'- -GggCGGUaGCGAC--------AGCUUGgGUGGUA- -5'
2052 5' -57.4 NC_001347.2 + 175167 0.66 0.908341
Target:  5'- uUCGCCcgCGaCUGUUuuACCCACCc- -3'
miRNA:   3'- gGGCGGuaGC-GACAGcuUGGGUGGua -5'
2052 5' -57.4 NC_001347.2 + 65123 0.66 0.908341
Target:  5'- cCCUGCUGaCGCUGUUGAGCUCggacacagcGCCGc -3'
miRNA:   3'- -GGGCGGUaGCGACAGCUUGGG---------UGGUa -5'
2052 5' -57.4 NC_001347.2 + 113478 0.67 0.901752
Target:  5'- gCCGCCGUgaggucuggaaacCGCUGUguGACCCACUc- -3'
miRNA:   3'- gGGCGGUA-------------GCGACAgcUUGGGUGGua -5'
2052 5' -57.4 NC_001347.2 + 107245 0.67 0.896166
Target:  5'- aCCGCCGgaccugaCGCUGUCGucACUCACg-- -3'
miRNA:   3'- gGGCGGUa------GCGACAGCu-UGGGUGgua -5'
2052 5' -57.4 NC_001347.2 + 170114 0.67 0.892345
Target:  5'- -aCGCCGUCuguGCUGUCGuugacgcgugacagcGGuCCCGCCGUg -3'
miRNA:   3'- ggGCGGUAG---CGACAGC---------------UU-GGGUGGUA- -5'
2052 5' -57.4 NC_001347.2 + 24133 0.67 0.883136
Target:  5'- aCCCGCCG-CGCcgGcCGucUCCACCAa -3'
miRNA:   3'- -GGGCGGUaGCGa-CaGCuuGGGUGGUa -5'
2052 5' -57.4 NC_001347.2 + 192131 0.67 0.883136
Target:  5'- aCCGCCGUCGUUGcCGGuCCCcguuuCCu- -3'
miRNA:   3'- gGGCGGUAGCGACaGCUuGGGu----GGua -5'
2052 5' -57.4 NC_001347.2 + 229940 0.67 0.883136
Target:  5'- uUCGCCGUCGCcGUCcu-CCgCACCAc -3'
miRNA:   3'- gGGCGGUAGCGaCAGcuuGG-GUGGUa -5'
2052 5' -57.4 NC_001347.2 + 461 0.67 0.883136
Target:  5'- uUCGCCGUCGCcGUCcu-CCgCACCAc -3'
miRNA:   3'- gGGCGGUAGCGaCAGcuuGG-GUGGUa -5'
2052 5' -57.4 NC_001347.2 + 548 0.67 0.876309
Target:  5'- cCCCGCCccUCGa----GGACCCACCAc -3'
miRNA:   3'- -GGGCGGu-AGCgacagCUUGGGUGGUa -5'
2052 5' -57.4 NC_001347.2 + 230027 0.67 0.876309
Target:  5'- cCCCGCCccUCGa----GGACCCACCAc -3'
miRNA:   3'- -GGGCGGu-AGCgacagCUUGGGUGGUa -5'
2052 5' -57.4 NC_001347.2 + 87485 0.67 0.86928
Target:  5'- -aCGUCGguaGCUGUCGAugCaCGCCAg -3'
miRNA:   3'- ggGCGGUag-CGACAGCUugG-GUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.