miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20526 3' -54.9 NC_004688.1 + 41009 0.66 0.884776
Target:  5'- --cUCGCAagaacCCCGACgaCGAGGgAGAUGa -3'
miRNA:   3'- gauAGCGU-----GGGCUGg-GUUCCgUCUAU- -5'
20526 3' -54.9 NC_004688.1 + 62905 0.66 0.877452
Target:  5'- --uUCGCAgCUCG-CCCuuguGAGGCGGGUGg -3'
miRNA:   3'- gauAGCGU-GGGCuGGG----UUCCGUCUAU- -5'
20526 3' -54.9 NC_004688.1 + 12266 0.66 0.862101
Target:  5'- uUGUCGUACCCGAUgCcGGGCu---- -3'
miRNA:   3'- gAUAGCGUGGGCUGgGuUCCGucuau -5'
20526 3' -54.9 NC_004688.1 + 26364 0.66 0.862101
Target:  5'- -cAUCGCcgaGCCCGcGCCCAuGGCgcccuGGAUGg -3'
miRNA:   3'- gaUAGCG---UGGGC-UGGGUuCCG-----UCUAU- -5'
20526 3' -54.9 NC_004688.1 + 45626 0.67 0.819927
Target:  5'- ---cCGCGCUCaACCCAGGGgGGAa- -3'
miRNA:   3'- gauaGCGUGGGcUGGGUUCCgUCUau -5'
20526 3' -54.9 NC_004688.1 + 17825 0.67 0.810904
Target:  5'- uUGUCG-AUCCGACCCuGGGUguAGGUGu -3'
miRNA:   3'- gAUAGCgUGGGCUGGGuUCCG--UCUAU- -5'
20526 3' -54.9 NC_004688.1 + 5332 0.68 0.781862
Target:  5'- gCUGUCGCugUacucguauccgagCGACUCGAGGguGAg- -3'
miRNA:   3'- -GAUAGCGugG-------------GCUGGGUUCCguCUau -5'
20526 3' -54.9 NC_004688.1 + 15889 0.69 0.722988
Target:  5'- gCUAUUGCGCguCCGAcaCCCAGGGCAu--- -3'
miRNA:   3'- -GAUAGCGUG--GGCU--GGGUUCCGUcuau -5'
20526 3' -54.9 NC_004688.1 + 5135 0.7 0.670705
Target:  5'- -aAUCG-GCCCGGCCCGcauugcGGCGGGUGg -3'
miRNA:   3'- gaUAGCgUGGGCUGGGUu-----CCGUCUAU- -5'
20526 3' -54.9 NC_004688.1 + 30365 0.7 0.638848
Target:  5'- -gGUCGCGgCCGAUCUcguAGGGCAGGc- -3'
miRNA:   3'- gaUAGCGUgGGCUGGG---UUCCGUCUau -5'
20526 3' -54.9 NC_004688.1 + 33619 0.71 0.617565
Target:  5'- ----aGCGCCCGGgUCGAGGguGAUGa -3'
miRNA:   3'- gauagCGUGGGCUgGGUUCCguCUAU- -5'
20526 3' -54.9 NC_004688.1 + 80316 0.72 0.564709
Target:  5'- ---aCGC-CCCGGCagucgCCGAGGCGGAUAu -3'
miRNA:   3'- gauaGCGuGGGCUG-----GGUUCCGUCUAU- -5'
20526 3' -54.9 NC_004688.1 + 63202 0.74 0.444436
Target:  5'- uCUGUCGcCACCgCGACugguCCGGGGCGGAUu -3'
miRNA:   3'- -GAUAGC-GUGG-GCUG----GGUUCCGUCUAu -5'
20526 3' -54.9 NC_004688.1 + 81745 1.07 0.002946
Target:  5'- cCUAUCGCACCCGACCCAAGGCAGAUAa -3'
miRNA:   3'- -GAUAGCGUGGGCUGGGUUCCGUCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.