miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20527 3' -51.8 NC_004688.1 + 9841 0.66 0.984654
Target:  5'- aCCCGCggcugcCGUAGcuacguccGCGGg--CCCGC-CCg -3'
miRNA:   3'- -GGGCGa-----GCAUC--------UGCUaaaGGGUGuGG- -5'
20527 3' -51.8 NC_004688.1 + 16499 0.66 0.98352
Target:  5'- gCCCGCUgcgaccaagcuucacCGgcGGCcaGAgagUUCCCgACACCc -3'
miRNA:   3'- -GGGCGA---------------GCauCUG--CUa--AAGGG-UGUGG- -5'
20527 3' -51.8 NC_004688.1 + 68227 0.66 0.98273
Target:  5'- aUCGCUCGccaGCGAg-UCCgGCACCc -3'
miRNA:   3'- gGGCGAGCaucUGCUaaAGGgUGUGG- -5'
20527 3' -51.8 NC_004688.1 + 28092 0.66 0.98273
Target:  5'- gCUGC-CGcAGaACGGUUUCC-ACGCCa -3'
miRNA:   3'- gGGCGaGCaUC-UGCUAAAGGgUGUGG- -5'
20527 3' -51.8 NC_004688.1 + 103089 0.66 0.98273
Target:  5'- aCCGCUaCGguGACGAgUUCCCAacggugcucgacUACCu -3'
miRNA:   3'- gGGCGA-GCauCUGCUaAAGGGU------------GUGG- -5'
20527 3' -51.8 NC_004688.1 + 37616 0.66 0.98273
Target:  5'- gCCC-CUCGgcGGUGAccUCCCACccGCCa -3'
miRNA:   3'- -GGGcGAGCauCUGCUaaAGGGUG--UGG- -5'
20527 3' -51.8 NC_004688.1 + 13555 0.66 0.98063
Target:  5'- aUCGCuUCGgcgcGGAcuuCGAUgcCCCGCACCu -3'
miRNA:   3'- gGGCG-AGCa---UCU---GCUAaaGGGUGUGG- -5'
20527 3' -51.8 NC_004688.1 + 24613 0.66 0.98063
Target:  5'- uCCUGCUCGaGGAUGGcgacUUCCAUGCg -3'
miRNA:   3'- -GGGCGAGCaUCUGCUaa--AGGGUGUGg -5'
20527 3' -51.8 NC_004688.1 + 43570 0.66 0.978345
Target:  5'- gUCUGCUCGgaagugcAGAUGAUaugaUCCaGCGCCg -3'
miRNA:   3'- -GGGCGAGCa------UCUGCUAa---AGGgUGUGG- -5'
20527 3' -51.8 NC_004688.1 + 24500 0.66 0.978345
Target:  5'- gCCCgGCuUCG-AGaACGGUUUCCCGuccgUGCCg -3'
miRNA:   3'- -GGG-CG-AGCaUC-UGCUAAAGGGU----GUGG- -5'
20527 3' -51.8 NC_004688.1 + 42225 0.66 0.978345
Target:  5'- gCCGCUgaCGUauucGGACGAgaucagUCCCGgaACCu -3'
miRNA:   3'- gGGCGA--GCA----UCUGCUaa----AGGGUg-UGG- -5'
20527 3' -51.8 NC_004688.1 + 58727 0.66 0.978345
Target:  5'- aUCCGaugaUCGUGGGCGugcUCgCCAUGCUg -3'
miRNA:   3'- -GGGCg---AGCAUCUGCuaaAG-GGUGUGG- -5'
20527 3' -51.8 NC_004688.1 + 103274 0.66 0.976881
Target:  5'- gCCGaccaUCGUGGACGAguacggcaaugaaUCCCcCAUCa -3'
miRNA:   3'- gGGCg---AGCAUCUGCUaa-----------AGGGuGUGG- -5'
20527 3' -51.8 NC_004688.1 + 33798 0.67 0.970297
Target:  5'- uCCUGCUCGUuGaACGugaaugugCCCGgGCCu -3'
miRNA:   3'- -GGGCGAGCAuC-UGCuaaa----GGGUgUGG- -5'
20527 3' -51.8 NC_004688.1 + 35087 0.67 0.967192
Target:  5'- aCCCGUUCGcguACGGg-UCCCAC-CCu -3'
miRNA:   3'- -GGGCGAGCaucUGCUaaAGGGUGuGG- -5'
20527 3' -51.8 NC_004688.1 + 61761 0.67 0.967192
Target:  5'- gCCGCgagCGUGGuGCuucUUCUCGCACCc -3'
miRNA:   3'- gGGCGa--GCAUC-UGcuaAAGGGUGUGG- -5'
20527 3' -51.8 NC_004688.1 + 39334 0.67 0.960307
Target:  5'- gCCCGCUccgcCGUAgcGACGAgcauuagUCCUAUgACCg -3'
miRNA:   3'- -GGGCGA----GCAU--CUGCUaa-----AGGGUG-UGG- -5'
20527 3' -51.8 NC_004688.1 + 31450 0.67 0.956515
Target:  5'- gCUGCUCGUGGAUGccugcugUUCUGCGCg -3'
miRNA:   3'- gGGCGAGCAUCUGCuaa----AGGGUGUGg -5'
20527 3' -51.8 NC_004688.1 + 69030 0.68 0.952484
Target:  5'- uCCCGCccccaGUGGACaGGUUcCCCGCAa- -3'
miRNA:   3'- -GGGCGag---CAUCUG-CUAAaGGGUGUgg -5'
20527 3' -51.8 NC_004688.1 + 15018 0.68 0.948209
Target:  5'- gCCCGCUCu--GGCGGggUCCC-C-CCu -3'
miRNA:   3'- -GGGCGAGcauCUGCUaaAGGGuGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.