miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20527 5' -59.5 NC_004688.1 + 19220 0.66 0.734199
Target:  5'- cGAGUucgGCGGcCGUucgugucgaaCGUCCaCGCCCUCGa -3'
miRNA:   3'- cCUCA---CGCCuGUA----------GCGGG-GUGGGAGC- -5'
20527 5' -59.5 NC_004688.1 + 39679 0.66 0.724485
Target:  5'- cGGGGUugguuucuCGGGCcuUCGCCCCGCCgggCGg -3'
miRNA:   3'- -CCUCAc-------GCCUGu-AGCGGGGUGGga-GC- -5'
20527 5' -59.5 NC_004688.1 + 92933 0.66 0.714693
Target:  5'- cGGAGUcGgGGGCGUUaCCCCcaGCuCCUUGg -3'
miRNA:   3'- -CCUCA-CgCCUGUAGcGGGG--UG-GGAGC- -5'
20527 5' -59.5 NC_004688.1 + 90978 0.66 0.714693
Target:  5'- cGGAgGUGCGGACcucguggucgCGCUCCACUg-CGg -3'
miRNA:   3'- -CCU-CACGCCUGua--------GCGGGGUGGgaGC- -5'
20527 5' -59.5 NC_004688.1 + 13548 0.66 0.694912
Target:  5'- -cGGcGCGGACuucgaUGCCCCGCaCCUCc -3'
miRNA:   3'- ccUCaCGCCUGua---GCGGGGUG-GGAGc -5'
20527 5' -59.5 NC_004688.1 + 297 0.67 0.678937
Target:  5'- aGGAGUcgcugcaguauuucgGgGGGCG--GCCCCGCCC-CGg -3'
miRNA:   3'- -CCUCA---------------CgCCUGUagCGGGGUGGGaGC- -5'
20527 5' -59.5 NC_004688.1 + 78401 0.67 0.674927
Target:  5'- uGAGgGCGGA-AUUGCgUCCGCCCUCc -3'
miRNA:   3'- cCUCaCGCCUgUAGCG-GGGUGGGAGc -5'
20527 5' -59.5 NC_004688.1 + 98750 0.67 0.634613
Target:  5'- -aAGUGagggacuaaaUGGACAagGCgCCCGCCCUCa -3'
miRNA:   3'- ccUCAC----------GCCUGUagCG-GGGUGGGAGc -5'
20527 5' -59.5 NC_004688.1 + 60239 0.68 0.614412
Target:  5'- aGGGUGCguaaucaguGGugGaaGCCCCGCCCgCGg -3'
miRNA:   3'- cCUCACG---------CCugUagCGGGGUGGGaGC- -5'
20527 5' -59.5 NC_004688.1 + 30813 0.68 0.588238
Target:  5'- cGGGUGUGccagccgagaagaacGGCAgcUCGCCgaagCCGCCCUCGg -3'
miRNA:   3'- cCUCACGC---------------CUGU--AGCGG----GGUGGGAGC- -5'
20527 5' -59.5 NC_004688.1 + 92141 0.68 0.584227
Target:  5'- uGAuUGCGGACAU-GCCCCGCUaUCa -3'
miRNA:   3'- cCUcACGCCUGUAgCGGGGUGGgAGc -5'
20527 5' -59.5 NC_004688.1 + 59697 0.68 0.56426
Target:  5'- aGGAGU-UGG-CAaaCGCCCCAgCCUCGa -3'
miRNA:   3'- -CCUCAcGCCuGUa-GCGGGGUgGGAGC- -5'
20527 5' -59.5 NC_004688.1 + 96027 0.69 0.53467
Target:  5'- cGGGUGaaGGCG-CGCUCCGCCCUaCGa -3'
miRNA:   3'- cCUCACgcCUGUaGCGGGGUGGGA-GC- -5'
20527 5' -59.5 NC_004688.1 + 98685 0.69 0.524925
Target:  5'- -cGGUGCGGAuauccCAUCGCCUacgCGCCC-CGa -3'
miRNA:   3'- ccUCACGCCU-----GUAGCGGG---GUGGGaGC- -5'
20527 5' -59.5 NC_004688.1 + 57034 0.69 0.515249
Target:  5'- cGGAGgauucGCGGugGUCgaucaGCUCCACCCg-- -3'
miRNA:   3'- -CCUCa----CGCCugUAG-----CGGGGUGGGagc -5'
20527 5' -59.5 NC_004688.1 + 23270 0.7 0.477319
Target:  5'- -aGGcUGCGGaaGCGUUGCgCCaCACCCUCGa -3'
miRNA:   3'- ccUC-ACGCC--UGUAGCG-GG-GUGGGAGC- -5'
20527 5' -59.5 NC_004688.1 + 91032 0.7 0.449799
Target:  5'- -cGGUcUGGACGUCGCCCCACgCCa-- -3'
miRNA:   3'- ccUCAcGCCUGUAGCGGGGUG-GGagc -5'
20527 5' -59.5 NC_004688.1 + 82719 0.72 0.349309
Target:  5'- uGGAGccGuCGGGCAgcgcacgCGCCCCACCCg-- -3'
miRNA:   3'- -CCUCa-C-GCCUGUa------GCGGGGUGGGagc -5'
20527 5' -59.5 NC_004688.1 + 42542 0.78 0.167576
Target:  5'- ---uUGUGGACcUCGCCCuCGCCCUCGg -3'
miRNA:   3'- ccucACGCCUGuAGCGGG-GUGGGAGC- -5'
20527 5' -59.5 NC_004688.1 + 82986 1.1 0.000993
Target:  5'- gGGAGUGCGGACAUCGCCCCACCCUCGu -3'
miRNA:   3'- -CCUCACGCCUGUAGCGGGGUGGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.