miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20528 5' -55.7 NC_004688.1 + 17874 0.66 0.890092
Target:  5'- aGCGCGagaCAGUGCggCGGcGAGggCGCGu -3'
miRNA:   3'- -CGCGCag-GUCGCGuaGCC-CUUa-GUGC- -5'
20528 5' -55.7 NC_004688.1 + 84445 0.66 0.883128
Target:  5'- gGCGuCGggagCCAGCGauUCaGGAAUCGCu -3'
miRNA:   3'- -CGC-GCa---GGUCGCguAGcCCUUAGUGc -5'
20528 5' -55.7 NC_004688.1 + 43559 0.66 0.875934
Target:  5'- aGUGCaGaugauaugaUCCAGCGCcgaGGGggUCGCc -3'
miRNA:   3'- -CGCG-C---------AGGUCGCGuagCCCuuAGUGc -5'
20528 5' -55.7 NC_004688.1 + 17596 0.66 0.86088
Target:  5'- gGCGCGgCCGGCGC-UCaaguaGGAggCGCGc -3'
miRNA:   3'- -CGCGCaGGUCGCGuAGc----CCUuaGUGC- -5'
20528 5' -55.7 NC_004688.1 + 725 0.67 0.844978
Target:  5'- gGCuGgGUCCAGCcaCAUCGGGcgcccgcaccAGUCGCa -3'
miRNA:   3'- -CG-CgCAGGUCGc-GUAGCCC----------UUAGUGc -5'
20528 5' -55.7 NC_004688.1 + 17318 0.67 0.810849
Target:  5'- uGCGCGcCCucgauGCGgAUgcCGGGGAUUGCGc -3'
miRNA:   3'- -CGCGCaGGu----CGCgUA--GCCCUUAGUGC- -5'
20528 5' -55.7 NC_004688.1 + 27548 0.67 0.810849
Target:  5'- -gGgGUCCAGCGgGcccggcCGGGGAUCAgGa -3'
miRNA:   3'- cgCgCAGGUCGCgUa-----GCCCUUAGUgC- -5'
20528 5' -55.7 NC_004688.1 + 101929 0.68 0.801879
Target:  5'- cCGUGauacgCCGGCGCAaCGGGGaguuguucgagGUCGCGc -3'
miRNA:   3'- cGCGCa----GGUCGCGUaGCCCU-----------UAGUGC- -5'
20528 5' -55.7 NC_004688.1 + 71954 0.69 0.739143
Target:  5'- gGCGuCGgCCGGCGCAUgaucagacgaucgaaCGGGAuGUCAUGc -3'
miRNA:   3'- -CGC-GCaGGUCGCGUA---------------GCCCU-UAGUGC- -5'
20528 5' -55.7 NC_004688.1 + 71037 0.69 0.715149
Target:  5'- uUGCG-CCAGCGC-UUGGGggUgagCGCGc -3'
miRNA:   3'- cGCGCaGGUCGCGuAGCCCuuA---GUGC- -5'
20528 5' -55.7 NC_004688.1 + 57440 0.69 0.715149
Target:  5'- cGCGCGcCCgAGCGaucuucUCGGGAGaauucugcUCACGg -3'
miRNA:   3'- -CGCGCaGG-UCGCgu----AGCCCUU--------AGUGC- -5'
20528 5' -55.7 NC_004688.1 + 56469 0.69 0.701968
Target:  5'- gGCGCG-CCGGCGaagcucuagaagcuCAUCGGGAacGUCGa- -3'
miRNA:   3'- -CGCGCaGGUCGC--------------GUAGCCCU--UAGUgc -5'
20528 5' -55.7 NC_004688.1 + 11196 0.7 0.694828
Target:  5'- -gGUGcCCAGCGUggucggcaggGUCGGGucgGUCACGa -3'
miRNA:   3'- cgCGCaGGUCGCG----------UAGCCCu--UAGUGC- -5'
20528 5' -55.7 NC_004688.1 + 50860 0.7 0.653611
Target:  5'- gGC-CGaCCGGCGCcguacCGGGAGUCACu -3'
miRNA:   3'- -CGcGCaGGUCGCGua---GCCCUUAGUGc -5'
20528 5' -55.7 NC_004688.1 + 71148 0.7 0.643241
Target:  5'- gGCGCGUCCAGC-CAuUCGGcuaGAcgcucAUCGCGc -3'
miRNA:   3'- -CGCGCAGGUCGcGU-AGCC---CU-----UAGUGC- -5'
20528 5' -55.7 NC_004688.1 + 86306 0.71 0.601752
Target:  5'- cGCGCGUCCcccAGUGCGgaaUGGGggUCu-- -3'
miRNA:   3'- -CGCGCAGG---UCGCGUa--GCCCuuAGugc -5'
20528 5' -55.7 NC_004688.1 + 39825 0.72 0.570849
Target:  5'- cCGUGUCCGGUGCcgUGGuuGUCGCa -3'
miRNA:   3'- cGCGCAGGUCGCGuaGCCcuUAGUGc -5'
20528 5' -55.7 NC_004688.1 + 81423 0.72 0.550459
Target:  5'- -aGCGagCCAGCGCAUCaGGGucaagggcuUCACGg -3'
miRNA:   3'- cgCGCa-GGUCGCGUAG-CCCuu-------AGUGC- -5'
20528 5' -55.7 NC_004688.1 + 4304 0.72 0.540346
Target:  5'- uGCG-GUCCAGgGUGUCGGcGAGgcgCGCGg -3'
miRNA:   3'- -CGCgCAGGUCgCGUAGCC-CUUa--GUGC- -5'
20528 5' -55.7 NC_004688.1 + 16698 0.74 0.452805
Target:  5'- uGCGcCGcCCAGCGCAcugcgguagggUUGGGGcAUCGCGg -3'
miRNA:   3'- -CGC-GCaGGUCGCGU-----------AGCCCU-UAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.