miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2053 5' -59.8 NC_001347.2 + 190626 0.66 0.870899
Target:  5'- uGUGaUCUGCacguAGCGCaaguccaacucCACCGUC-UGCCGc -3'
miRNA:   3'- -CGC-AGACG----UCGCG-----------GUGGCAGcACGGC- -5'
2053 5' -59.8 NC_001347.2 + 1838 0.66 0.870899
Target:  5'- cGCGUC---GGCGCCGCaccccgCGUCGcUGCUGa -3'
miRNA:   3'- -CGCAGacgUCGCGGUG------GCAGC-ACGGC- -5'
2053 5' -59.8 NC_001347.2 + 130258 0.66 0.863868
Target:  5'- gGCGccCUGCAGUGCCACga--GUGUCa -3'
miRNA:   3'- -CGCa-GACGUCGCGGUGgcagCACGGc -5'
2053 5' -59.8 NC_001347.2 + 76974 0.66 0.863868
Target:  5'- -aGUCuUGcCGGCGC--CCGcCGUGCCGg -3'
miRNA:   3'- cgCAG-AC-GUCGCGguGGCaGCACGGC- -5'
2053 5' -59.8 NC_001347.2 + 80965 0.66 0.862439
Target:  5'- aGCGgacuaccacCGGCGCCGCCGU--UGCCGu -3'
miRNA:   3'- -CGCagac-----GUCGCGGUGGCAgcACGGC- -5'
2053 5' -59.8 NC_001347.2 + 115000 0.66 0.85665
Target:  5'- cCG-CUGCcguacAGCGCCGCCGcUCauaaUGCCGu -3'
miRNA:   3'- cGCaGACG-----UCGCGGUGGC-AGc---ACGGC- -5'
2053 5' -59.8 NC_001347.2 + 161581 0.66 0.85665
Target:  5'- -----cGCGGCGCCGCCGgcuacgCGU-CCGg -3'
miRNA:   3'- cgcagaCGUCGCGGUGGCa-----GCAcGGC- -5'
2053 5' -59.8 NC_001347.2 + 1390 0.66 0.849251
Target:  5'- uCGUaCUGguG-GCUACCGUgGUGCaCGa -3'
miRNA:   3'- cGCA-GACguCgCGGUGGCAgCACG-GC- -5'
2053 5' -59.8 NC_001347.2 + 192121 0.66 0.849251
Target:  5'- -gGUC-GCcGCcaCCGCCGUCGuUGCCGg -3'
miRNA:   3'- cgCAGaCGuCGc-GGUGGCAGC-ACGGC- -5'
2053 5' -59.8 NC_001347.2 + 30597 0.66 0.849251
Target:  5'- gGCGgcuucCUGCGGC-CgGCCG-CGgUGCCGg -3'
miRNA:   3'- -CGCa----GACGUCGcGgUGGCaGC-ACGGC- -5'
2053 5' -59.8 NC_001347.2 + 421 0.66 0.849251
Target:  5'- cGCGUCuucuuuucgccgUGC-GCGCCGCaCGUCGcuuuuauucGCCGu -3'
miRNA:   3'- -CGCAG------------ACGuCGCGGUG-GCAGCa--------CGGC- -5'
2053 5' -59.8 NC_001347.2 + 38259 0.66 0.849251
Target:  5'- cGCGUCcGCccCGaCCACCG-CGUGCgCGu -3'
miRNA:   3'- -CGCAGaCGucGC-GGUGGCaGCACG-GC- -5'
2053 5' -59.8 NC_001347.2 + 229900 0.66 0.849251
Target:  5'- cGCGUCuucuuuucgccgUGC-GCGCCGCaCGUCGcuuuuauucGCCGu -3'
miRNA:   3'- -CGCAG------------ACGuCGCGGUG-GCAGCa--------CGGC- -5'
2053 5' -59.8 NC_001347.2 + 222422 0.66 0.849251
Target:  5'- gGCGUC-GCcGCGUCucguUCGUCGagGCCGa -3'
miRNA:   3'- -CGCAGaCGuCGCGGu---GGCAGCa-CGGC- -5'
2053 5' -59.8 NC_001347.2 + 12082 0.66 0.841677
Target:  5'- gGCGUcCUGCAGUucucuaCCACCGUguUGCCc -3'
miRNA:   3'- -CGCA-GACGUCGc-----GGUGGCAgcACGGc -5'
2053 5' -59.8 NC_001347.2 + 65378 0.66 0.833933
Target:  5'- uGCGUCUGCccgugAGCaCCGCUGcCGcGCCc -3'
miRNA:   3'- -CGCAGACG-----UCGcGGUGGCaGCaCGGc -5'
2053 5' -59.8 NC_001347.2 + 128439 0.66 0.833933
Target:  5'- gGCGcCUGCuGCGUgGCCGUCaagcgGCgCGa -3'
miRNA:   3'- -CGCaGACGuCGCGgUGGCAGca---CG-GC- -5'
2053 5' -59.8 NC_001347.2 + 22813 0.66 0.833933
Target:  5'- aGCGUCUGU---GUCAgCGUCGUGuuGu -3'
miRNA:   3'- -CGCAGACGucgCGGUgGCAGCACggC- -5'
2053 5' -59.8 NC_001347.2 + 171299 0.66 0.833933
Target:  5'- cGCGUgaGCAGCGCUACuCGcuguUUGggcgGCCu -3'
miRNA:   3'- -CGCAgaCGUCGCGGUG-GC----AGCa---CGGc -5'
2053 5' -59.8 NC_001347.2 + 208820 0.66 0.833933
Target:  5'- cCG-CUGCGccGCGCCGCCGUCcucgaagcGCCa -3'
miRNA:   3'- cGCaGACGU--CGCGGUGGCAGca------CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.