miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20531 3' -54.4 NC_004688.1 + 45975 0.66 0.912249
Target:  5'- gGCCCCgaccACGUCGAGUGCgacaaguguuUCGAggagUGGCa -3'
miRNA:   3'- -CGGGG----UGCGGCUUAUG----------AGCUa---GUCGa -5'
20531 3' -54.4 NC_004688.1 + 36451 0.66 0.906003
Target:  5'- cGCUCCGCGCCGGAcauuccaaccUGCggggacaguUCGAUCccgaAGCc -3'
miRNA:   3'- -CGGGGUGCGGCUU----------AUG---------AGCUAG----UCGa -5'
20531 3' -54.4 NC_004688.1 + 42478 0.66 0.892768
Target:  5'- cGCCCCACaGCUGAuUGgUgCGAUCaaagAGCa -3'
miRNA:   3'- -CGGGGUG-CGGCUuAUgA-GCUAG----UCGa -5'
20531 3' -54.4 NC_004688.1 + 10530 0.66 0.892768
Target:  5'- cGCCCgGCGCgagCGA--GCUCGAUgaAGCg -3'
miRNA:   3'- -CGGGgUGCG---GCUuaUGAGCUAg-UCGa -5'
20531 3' -54.4 NC_004688.1 + 10365 0.67 0.885785
Target:  5'- cGCuCCUugGCCG---GCUCG-UCGGCc -3'
miRNA:   3'- -CG-GGGugCGGCuuaUGAGCuAGUCGa -5'
20531 3' -54.4 NC_004688.1 + 10231 0.67 0.885785
Target:  5'- gGCCuCCAgcuUGCCGGAgcGCUCGAUuucgcucucCAGCUc -3'
miRNA:   3'- -CGG-GGU---GCGGCUUa-UGAGCUA---------GUCGA- -5'
20531 3' -54.4 NC_004688.1 + 68889 0.67 0.881481
Target:  5'- gGCCCUACuGCCGGuaAcgcagaccauuggcuUGCUCGAUCcGCc -3'
miRNA:   3'- -CGGGGUG-CGGCU--U---------------AUGAGCUAGuCGa -5'
20531 3' -54.4 NC_004688.1 + 38874 0.67 0.878564
Target:  5'- cGCCgCGCGCCccuccucCUgCGAUCAGCg -3'
miRNA:   3'- -CGGgGUGCGGcuuau--GA-GCUAGUCGa -5'
20531 3' -54.4 NC_004688.1 + 4205 0.67 0.878564
Target:  5'- cGCCgCggGCGCCGAGgccCUCGGUUAGg- -3'
miRNA:   3'- -CGGgG--UGCGGCUUau-GAGCUAGUCga -5'
20531 3' -54.4 NC_004688.1 + 80904 0.67 0.87111
Target:  5'- uGCCCCAgGCCGAugaccgucccGUcACcccggCGGUCGGUa -3'
miRNA:   3'- -CGGGGUgCGGCU----------UA-UGa----GCUAGUCGa -5'
20531 3' -54.4 NC_004688.1 + 26662 0.67 0.87111
Target:  5'- cGCCCUGCuGCUGu-UGCUUG-UCAGCa -3'
miRNA:   3'- -CGGGGUG-CGGCuuAUGAGCuAGUCGa -5'
20531 3' -54.4 NC_004688.1 + 353 0.67 0.855525
Target:  5'- gGCCCCGCaCUGAacAUACUCGggCuuaacgGGCUg -3'
miRNA:   3'- -CGGGGUGcGGCU--UAUGAGCuaG------UCGA- -5'
20531 3' -54.4 NC_004688.1 + 31037 0.68 0.830558
Target:  5'- uGCCCC-CGCCGAGgcugGCgagguugccaggUCG-UCGGCg -3'
miRNA:   3'- -CGGGGuGCGGCUUa---UG------------AGCuAGUCGa -5'
20531 3' -54.4 NC_004688.1 + 14041 0.68 0.830558
Target:  5'- gGCgCCC-CGCCGAGcaagaCGAUCGGCa -3'
miRNA:   3'- -CG-GGGuGCGGCUUauga-GCUAGUCGa -5'
20531 3' -54.4 NC_004688.1 + 41678 0.68 0.821842
Target:  5'- gGCCCUugGagcCCGcggACUCGAUgAGCa -3'
miRNA:   3'- -CGGGGugC---GGCuuaUGAGCUAgUCGa -5'
20531 3' -54.4 NC_004688.1 + 95149 0.68 0.821842
Target:  5'- cCCCCGgGCCGucu-CUCGA-CAGCc -3'
miRNA:   3'- cGGGGUgCGGCuuauGAGCUaGUCGa -5'
20531 3' -54.4 NC_004688.1 + 27304 0.69 0.79463
Target:  5'- -aUCCGCGCUGAAgcUugUCGGUCGGg- -3'
miRNA:   3'- cgGGGUGCGGCUU--AugAGCUAGUCga -5'
20531 3' -54.4 NC_004688.1 + 51199 0.69 0.766019
Target:  5'- uGgUgCGCGCCGAGUACUgcaucugcgggUGGUCGGCg -3'
miRNA:   3'- -CgGgGUGCGGCUUAUGA-----------GCUAGUCGa -5'
20531 3' -54.4 NC_004688.1 + 59967 0.69 0.756217
Target:  5'- uGCCaCCGCGCCGGcgACcaagcgccCGGUUGGCUc -3'
miRNA:   3'- -CGG-GGUGCGGCUuaUGa-------GCUAGUCGA- -5'
20531 3' -54.4 NC_004688.1 + 105959 0.69 0.756217
Target:  5'- -aCCCACGCCGcgcgacuUGCgCGAUgAGCUg -3'
miRNA:   3'- cgGGGUGCGGCuu-----AUGaGCUAgUCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.